PLAZA 3.0 Monocots gene overview : SI001G00380

Gene: SI001G00380 (Setaria italica)

Overview

Gene Identifier: SI001G00380
Transcript Identifier: SI001G00380.1
Gene Type: Coding gene
Location: scaffold_1 : 229378-236527 : positive

Family

Gene family: HOM03M003497
(25 genes in 14 species)
specific family
Subfamily: ORTHO03M006776
(6 genes in 6 species)
specific family

Loading...please wait

Descriptions

Description (AnnoMine): MADS-box

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Si019985m
tid	Si019985m
id	PAC:19686270
GeneName	Si019985m.g

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA	Genome Project	regulation of transcription, DNA-dependent

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003700	IEA	Genome Project	sequence-specific DNA binding transcription factor activity
GO:0003677	IEA	Genome Project	DNA binding
GO:0046983	IEA	Genome Project	protein dimerization activity
GO:0043565	IEA	Genome Project	sequence-specific DNA binding
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT5G52550

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	Genome Project	nucleus

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002487	Transcription factor, K-box
IPR002100	Transcription factor, MADS-box

Mapman id	Description
27.3.24	RNA.regulation of transcription.MADS box transcription factor family

No SignalP domains detected for this gene.