PLAZA 3.0 Monocots gene overview : SB01G049880

Gene: SB01G049880 (Sorghum bicolor)

Overview

Gene Identifier: SB01G049880
Transcript Identifier: SB01G049880.1
Gene Type: Coding gene
Location: chr_1 : 72873949-72881133 : positive

Family

Gene family: HOM03M000164
(290 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): Actin, cytoplasmic

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	5050378
tid	5050378

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006325	ISO	PLAZA Integrative Orthology	chromatin organization	AT1G18450
GO:0048235	ISO	PLAZA Integrative Orthology	pollen sperm cell differentiation	AT1G18450
GO:0048574	ISO	PLAZA Integrative Orthology	long-day photoperiodism, flowering	AT1G18450
GO:0006996	IEA	PLAZA Homology	organelle organization	HOM03M000164

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005524	IEA	PLAZA Homology	ATP binding	HOM03M000164

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT1G18450
GO:0005730	ISO	PLAZA Integrative Orthology	nucleolus	AT1G18450
GO:0005856	IEA	PLAZA Homology	cytoskeleton	HOM03M000164
GO:0044446	IEA	PLAZA Homology	intracellular organelle part	HOM03M000164

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR004000	Actin-related protein

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.