PLAZA 3.0 Monocots gene overview : SB01G039890

Gene: SB01G039890 (Sorghum bicolor)

Overview

Gene Identifier: SB01G039890
Transcript Identifier: SB01G039890.1
Gene Type: Coding gene
Location: chr_1 : 63332126-63333535 : positive

Family

Gene family: HOM03M000064
(666 genes in 16 species)
specific family
Subfamily: ORTHO03M011173
(4 genes in 4 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): Protein phosphatase 2C

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	5049731
tid	5049731

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006470	IEA	InterPro	protein dephosphorylation
GO:0009788	ISO	PLAZA Integrative Orthology	negative regulation of abscisic acid-activated signaling pathway	AT1G07430
GO:0009939	ISO	PLAZA Integrative Orthology	positive regulation of gibberellic acid mediated signaling pathway	AT1G07430
GO:0010030	ISO	PLAZA Integrative Orthology	positive regulation of seed germination	AT1G07430
GO:0048838	ISO	PLAZA Integrative Orthology	release of seed from dormancy	AT1G07430
GO:1902039	ISO	PLAZA Integrative Orthology	negative regulation of seed dormancy process	AT1G07430
GO:0006796	IEA	PLAZA Homology	phosphate-containing compound metabolic process	HOM03M000064
GO:0006793	IEA	PLAZA Homology	phosphorus metabolic process	HOM03M000064
GO:0016311	IEA	PLAZA Homology	dephosphorylation	HOM03M000064
GO:0043412	IEA	PLAZA Homology	macromolecule modification	HOM03M000064
GO:0044267	IEA	PLAZA Homology	cellular protein metabolic process	HOM03M000064
GO:0036211	IEA	PLAZA Homology	protein modification process	HOM03M000064
GO:0006464	IEA	PLAZA Homology	cellular protein modification process	HOM03M000064

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004722	IEA	InterPro	protein serine/threonine phosphatase activity
GO:0003824	IEA	InterPro	catalytic activity
GO:0016788	IEA	PLAZA Homology	hydrolase activity, acting on ester bonds	HOM03M000064
GO:0042578	IEA	PLAZA Homology	phosphoric ester hydrolase activity	HOM03M000064
GO:0016791	IEA	PLAZA Homology	phosphatase activity	HOM03M000064
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03M000064
GO:0004721	IEA	PLAZA Homology	phosphoprotein phosphatase activity	HOM03M000064

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001932	Protein phosphatase 2C (PP2C)-like domain
IPR015655	Protein phosphatase 2C
IPR000222	Protein phosphatase 2C, manganese/magnesium aspartate binding site

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.