Gene: SB01G013520 (Sorghum bicolor)

Overview top

Gene Identifier
SB01G013520
Transcript Identifier
SB01G013520.1
Gene Type
Coding gene
Location
chr_1 : 12577208-12579043 : negative

Family

Gene family
HOM03M000349
(169 genes in 16 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pid5028597
tid5028597

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009688ISOPLAZA Integrative Orthologyabscisic acid biosynthetic processAT1G30100 AT3G24220 SL07G056570
GO:0009414ISOPLAZA Integrative Orthologyresponse to water deprivationAT1G30100 AT3G14440
GO:0010162ISOPLAZA Integrative Orthologyseed dormancy processAT1G30100
GO:0042538ISOPLAZA Integrative Orthologyhyperosmotic salinity responseAT3G14440
GO:0006970ISOPLAZA Integrative Orthologyresponse to osmotic stressAT3G14440
GO:0009639ISOPLAZA Integrative Orthologyresponse to red or far red lightAT3G24220
GO:0010114ISOPLAZA Integrative Orthologyresponse to red lightAT3G24220
GO:0043289ISOPLAZA Integrative Orthologyapocarotenoid biosynthetic processSL07G056570

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0045549ISOPLAZA Integrative Orthology9-cis-epoxycarotenoid dioxygenase activityAT1G30100 AT3G14440 AT3G24220 AT4G18350
GO:0016702IEAPLAZA Homologyoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygenHOM03M000349

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009579ISOPLAZA Integrative OrthologythylakoidAT1G30100
GO:0009535ISOPLAZA Integrative Orthologychloroplast thylakoid membraneAT3G14440 AT3G24220 AT4G18350
GO:0009570ISOPLAZA Integrative Orthologychloroplast stromaAT3G14440 AT3G24220 AT4G18350
GO:0009536IEAPLAZA HomologyplastidHOM03M000349

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR004294Carotenoid oxygenase

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.