PLAZA 3.0 Monocots gene overview : SB01G003120

Gene: SB01G003120 (Sorghum bicolor)

Overview

Gene Identifier: SB01G003120
Transcript Identifier: SB01G003120.1
Gene Type: Coding gene
Location: chr_1 : 2515194-2518825 : positive

Family

Gene family: HOM03M000050
(752 genes in 15 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): Expansin-A4

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	5047822
tid	5047822

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009664	IEA	InterPro	plant-type cell wall organization
GO:0006949	ISO	PLAZA Integrative Orthology	syncytium formation	AT2G28950 AT2G37640 AT2G39700 AT3G55500
GO:0009739	ISO	PLAZA Integrative Orthology	response to gibberellin stimulus	AT2G37640
GO:0010114	ISO	PLAZA Integrative Orthology	response to red light	AT2G37640
GO:0071669	IEA	PLAZA Homology	plant-type cell wall organization or biogenesis	HOM03M000050
GO:0071555	IEA	PLAZA Homology	cell wall organization	HOM03M000050
GO:0045229	IEA	PLAZA Homology	external encapsulating structure organization	HOM03M000050
GO:0071554	IEA	PLAZA Homology	cell wall organization or biogenesis	HOM03M000050
GO:0071840	IEA	PLAZA Homology	cellular component organization or biogenesis	HOM03M000050
GO:0016043	IEA	PLAZA Homology	cellular component organization	HOM03M000050

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005576	IEA	InterPro	extracellular region
GO:0009505	ISO	PLAZA Integrative Orthology	plant-type cell wall	AT2G28950 AT2G39700
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT2G39700
GO:0009506	ISO	PLAZA Integrative Orthology	plasmodesma	AT2G39700
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT5G02260

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR007117	Expansin, cellulose-binding-like domain
IPR002963	Expansin
IPR007118	Expansin/Lol pI
IPR009009	RlpA-like double-psi beta-barrel domain
IPR014733	Barwin-like endoglucanase
IPR007112	Expansin/pollen allergen, DPBB domain

No MapMan annotations defined for this gene.

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network