PLAZA 3.0 Monocots gene overview : SB00G00170

Gene: SB00G00170 (Sorghum bicolor)

Overview

Gene Identifier: SB00G00170
Transcript Identifier: SB00G00170.1
Gene Type: Coding gene
Location: scaffold_10 : 5710754-5712128 : negative

Family

Gene family: HOM03M000679
(102 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): sigma factor RpoD

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	5047184
tid	5047184

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006352	IEA	InterPro	DNA-dependent transcription, initiation
GO:0006355	IEA	InterPro	regulation of transcription, DNA-dependent
GO:2001141	IEA	PLAZA Homology	regulation of RNA biosynthetic process	HOM03M000679

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016987	IEA	InterPro	sigma factor activity
GO:0003700	IEA	InterPro	sequence-specific DNA binding transcription factor activity
GO:0003677	IEA	InterPro	DNA binding
GO:0000990	IEA	PLAZA Homology	core RNA polymerase binding transcription factor activity	HOM03M000679
GO:0000996	IEA	PLAZA Homology	core DNA-dependent RNA polymerase binding promoter specificity activity	HOM03M000679

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009536	ISO	PLAZA Integrative Orthology	plastid	OS11G26160

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR000943	RNA polymerase sigma-70
IPR007630	RNA polymerase sigma-70 region 4
IPR013325	RNA polymerase sigma factor, region 2
IPR013324	RNA polymerase sigma factor, region 3/4
IPR007627	RNA polymerase sigma-70 region 2
IPR014284	RNA polymerase sigma-70 like domain
IPR007624	RNA polymerase sigma-70 region 3

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.

Database	Type
PlnTFDB	Sigma70-like