Gene: PT18G11490 (Populus trichocarpa)

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Gene Identifier
PT18G11490
Transcript Identifier
PT18G11490.1
Gene Type
Coding gene
Location
Chr18 : 13971442-13976014 : positive

Family

Gene family
HOM03M000661
(104 genes in 16 species)
specific family
Subfamily
ORTHO03M007242
(5 genes in 5 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
116 kDa U5 small nuclear ribonucleoprotein component
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.018G114900.1
idPAC:27010960

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007264IEAGenome Projectsmall GTPase mediated signal transduction
GO:0045694ISOPLAZA Integrative Orthologyregulation of embryo sac egg cell differentiationAT1G06220
GO:0009793ISOPLAZA Integrative Orthologyembryo development ending in seed dormancyAT1G06220

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003924IEAGenome ProjectGTPase activity
GO:0005525IEAGenome ProjectGTP binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005622IEAGenome Projectintracellular
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT5G25230
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT5G25230
GO:0016607ISOPLAZA Integrative Orthologynuclear speckAT1G06220
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT1G06220
GO:0005618ISOPLAZA Integrative Orthologycell wallAT1G06220

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009000Translation protein, beta-barrel domain
IPR020568Ribosomal protein S5 domain 2-type fold
IPR000795Elongation factor, GTP-binding domain
IPR000640Translation elongation factor EFG, V domain
IPR005225Small GTP-binding protein domain
IPR009022Elongation factor G, III-V domain
IPR014721Ribosomal protein S5 domain 2-type fold, subgroup
IPR004161Translation elongation factor EFTu/EF1A, domain 2
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR005517Translation elongation factor EFG/EF2, domain IV

Mapman id Description
29.2.4protein.synthesis.elongation
No SignalP domains detected for this gene.