Gene: PT17G12940 (Populus trichocarpa)

Overview top

Gene Identifier
PT17G12940
Transcript Identifier
PT17G12940.1
Gene Type
Coding gene
Location
Chr17 : 14048168-14049866 : positive

Family

Gene family
HOM03M001476
(52 genes in 13 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
HMG-Y-related protein A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.017G129400.1
idPAC:26984538

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006334IEAGenome Projectnucleosome assembly
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0034728IEAPLAZA Homologynucleosome organizationHOM03M001476

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000786IEAGenome Projectnucleosome
GO:0005634IEAGenome Projectnucleus
GO:0000785IEAInterProchromatin
GO:1990104IEAPLAZA HomologyDNA bending complexHOM03M001476

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR017956AT hook, DNA-binding motif
IPR000116High mobility group, HMG-I/HMG-Y
IPR020478AT hook-like
IPR011991Winged helix-turn-helix DNA-binding domain
IPR005818Linker histone H1/H5, domain H15

Mapman id Description
28.1.3DNA.synthesis/chromatin structure.histone
No SignalP domains detected for this gene.