Gene: PT17G04620 (Populus trichocarpa)

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Gene Identifier
PT17G04620
Transcript Identifier
PT17G04620.1
Gene Type
Coding gene
Location
Chr17 : 3854737-3859909 : negative

Family

Gene family
HOM03M000226
(224 genes in 16 species)
specific family
Subfamily
ORTHO03M000043
(50 genes in 14 species)
specific family

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Descriptions

Description (AnnoMine)
Linoleate 9S-lipoxygenase
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.017G046200.1
idPAC:26984248

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0055114IEAGenome Projectoxidation-reduction process
GO:0009611ISOPLAZA Integrative Orthologyresponse to woundingAT3G45140 OS08G39840
GO:0080027ISOPLAZA Integrative Orthologyresponse to herbivoreAT3G45140
GO:0009753ISOPLAZA Integrative Orthologyresponse to jasmonic acidAT3G45140
GO:0009617ISOPLAZA Integrative Orthologyresponse to bacteriumAT3G45140
GO:0009620ISOPLAZA Integrative Orthologyresponse to fungusAT3G45140
GO:0034440ISOPLAZA Integrative Orthologylipid oxidationAT3G45140
GO:0009695ISOPLAZA Integrative Orthologyjasmonic acid biosynthetic processAT3G45140
GO:0009414ISOPLAZA Integrative Orthologyresponse to water deprivationAT3G45140
GO:0051707ISOPLAZA Integrative Orthologyresponse to other organismAT3G45140 OS08G39840

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0016702IEAGenome Projectoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872IEAGenome Projectmetal ion binding
GO:0005515IEAInterProprotein binding
GO:0005506IEAInterProiron ion binding
GO:0016165IEAInterProlinoleate 13S-lipoxygenase activity
GO:0016166ISOPLAZA Integrative Orthologyphytoene dehydrogenase activityOS08G39840
GO:0051213IEAPLAZA Homologydioxygenase activityHOM03M000226
GO:0016701IEAPLAZA Homologyoxidoreductase activity, acting on single donors with incorporation of molecular oxygenHOM03M000226

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISOPLAZA Integrative OrthologycytoplasmAT3G45140
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT3G45140
GO:0009941ISOPLAZA Integrative Orthologychloroplast envelopeAT3G45140
GO:0009535ISOPLAZA Integrative Orthologychloroplast thylakoid membraneAT3G45140
GO:0009570ISOPLAZA Integrative Orthologychloroplast stromaAT3G45140

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001246Lipoxygenase, plant
IPR027433Lipoxygenase, domain 3
IPR001024PLAT/LH2 domain
IPR008976Lipase/lipooxygenase, PLAT/LH2
IPR013819Lipoxygenase, C-terminal
IPR020833Lipoxygenase, iron binding site
IPR000907Lipoxygenase
IPR020834Lipoxygenase, conserved site

Mapman id Description
17.7.1.2hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase
No SignalP domains detected for this gene.