Gene: PT10G17900 (Populus trichocarpa)

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Gene Identifier
PT10G17900
Transcript Identifier
PT10G17900.1
Gene Type
Coding gene
Location
Chr10 : 17794013-17802505 : negative

Family

Gene family
HOM03M003499
(25 genes in 16 species)
specific family
Subfamily
ORTHO03M021868
(2 genes in 2 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
HIV Tat-specific factor 1 homolog
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.010G179000.1
idPAC:26982051

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009910ISOPLAZA Integrative Orthologynegative regulation of flower developmentAT5G16260
GO:0000184ISOPLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, nonsense-mediated decayAT5G16260

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676IEAGenome Projectnucleic acid binding
GO:0000166IEAInterPronucleotide binding
GO:0003729ISOPLAZA Integrative OrthologymRNA bindingAT5G16260
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03M003499
GO:0005515IEAPLAZA Homologyprotein bindingHOM03M003499

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829ISOPLAZA Integrative OrthologycytosolAT5G16260
GO:0005634ISOPLAZA Integrative OrthologynucleusAT5G16260

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000504RNA recognition motif domain
IPR025640Domain of unknown function DUF4339
IPR012677Nucleotide-binding, alpha-beta plait
IPR003954RNA recognition motif domain, eukaryote

Mapman id Description
27.4RNA.RNA binding
No SignalP domains detected for this gene.