Gene: PT08G14830 (Populus trichocarpa)

Overview top

Gene Identifier
PT08G14830
Transcript Identifier
PT08G14830.1
Gene Type
Coding gene
Location
Chr08 : 10000778-10004847 : positive

Family

Gene family
HOM03M000391
(156 genes in 16 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Cullin-3
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.008G148300.1
idPAC:27039262

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006511IEAGenome Projectubiquitin-dependent protein catabolic process
GO:0009960ISOPLAZA Integrative Orthologyendosperm developmentAT1G69670
GO:0009793ISOPLAZA Integrative Orthologyembryo development ending in seed dormancyAT1G69670
GO:0044265IEAPLAZA Homologycellular macromolecule catabolic processHOM03M000391
GO:0030163IEAPLAZA Homologyprotein catabolic processHOM03M000391
GO:0051603IEAPLAZA Homologyproteolysis involved in cellular protein catabolic processHOM03M000391
GO:0019941IEAPLAZA Homologymodification-dependent protein catabolic processHOM03M000391
GO:0044257IEAPLAZA Homologycellular protein catabolic processHOM03M000391
GO:0043632IEAPLAZA Homologymodification-dependent macromolecule catabolic processHOM03M000391

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0031625IEAGenome Projectubiquitin protein ligase binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT1G69670
GO:0044389IEAPLAZA Homologysmall conjugating protein ligase bindingHOM03M000391
GO:0019899IEAPLAZA Homologyenzyme bindingHOM03M000391

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0031461IEAGenome Projectcullin-RING ubiquitin ligase complex
GO:0019005ISOPLAZA Integrative OrthologySCF ubiquitin ligase complexAT1G69670
GO:0000151ISOPLAZA Integrative Orthologyubiquitin ligase complexAT1G69670

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR019559Cullin protein, neddylation domain
IPR016158Cullin homology
IPR016159Cullin repeat-like-containing domain
IPR001373Cullin, N-terminal
IPR011991Winged helix-turn-helix DNA-binding domain

Mapman id Description
29.5.11.4.3.3protein.degradation.ubiquitin.E3.SCF.cullin
29.5.11.4.5.1protein.degradation.ubiquitin.E3.BTB/POZ Cullin3.Cullin3
No SignalP domains detected for this gene.