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WorkbenchGene: PT08G10530 (Populus trichocarpa)
Overview 
- Gene Identifier
- PT08G10530
- Transcript Identifier
- PT08G10530.1
- Gene Type
- Coding gene
- Location
- Chr08 : 6679075-6683745 : negative
Family
- Gene family
- Duplication type
- Block duplicate
Descriptions
- Description (AnnoMine)
-
ATP-citrate synthase beta chain protein 1
Description of best ortholog(s):
Identifiers
| Identifier | Name |
|---|---|
| pid | Potri.008G105300.2 |
| id | PAC:27037079 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0044262 | IEA | Genome Project | cellular carbohydrate metabolic process | |
| GO:0008152 | IEA | Genome Project | metabolic process | |
| GO:0006085 | ISO | PLAZA Integrative Orthology | acetyl-CoA biosynthetic process | AT3G06650 AT5G49460 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0046912 | IEA | Genome Project | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | |
| GO:0003824 | IEA | Genome Project | catalytic activity | |
| GO:0003878 | IEA | InterPro | ATP citrate synthase activity | |
| GO:0004775 | IEA | InterPro | succinate-CoA ligase (ADP-forming) activity | |
| GO:0004774 | IEA | PLAZA Homology | succinate-CoA ligase activity | HOM03M003544 |
Cellular Component
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0016020 | ISO | PLAZA Integrative Orthology | membrane | AT3G06650 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT3G06650 AT5G49460 |
| GO:0009346 | ISO | PLAZA Integrative Orthology | citrate lyase complex | AT5G49460 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT5G49460 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| InterPro | Description |
|---|---|
| IPR002020 | Citrate synthase-like |
| IPR016143 | Citrate synthase-like, small alpha subdomain |
| IPR005810 | Succinyl-CoA ligase, alpha subunit |
| IPR005811 | ATP-citrate lyase/succinyl-CoA ligase |
| IPR017440 | ATP-citrate lyase/succinyl-CoA ligase, active site |
| IPR017866 | Succinyl-CoA synthetase, beta subunit, conserved site |
| IPR016142 | Citrate synthase-like, large alpha subdomain |
| IPR016102 | Succinyl-CoA synthetase-like |
| IPR016040 | NAD(P)-binding domain |
| IPR016141 | Citrate synthase-like, core |
| Mapman id | Description |
|---|---|
| 8.2.11 | TCA / org transformation.other organic acid transformatons.atp-citrate lyase |
No SignalP domains detected for this gene.