Gene: PT06G11600 (Populus trichocarpa)

Overview top

Gene Identifier
PT06G11600
Transcript Identifier
PT06G11600.1
Gene Type
Coding gene
Location
Chr06 : 9116829-9126257 : negative

Family

Gene family
HOM03M001003
(72 genes in 16 species)
specific family
Duplication type
Block duplicate

Loading...please wait

Descriptions

Description (AnnoMine)
DEMETER-like protein 2
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.006G116000.1
idPAC:27008440

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006284IEAGenome Projectbase-excision repair
GO:0006281IEAInterProDNA repair
GO:0006342ISOPLAZA Integrative Orthologychromatin silencingAT2G36490
GO:0006306ISOPLAZA Integrative OrthologyDNA methylationAT2G36490
GO:0031936ISOPLAZA Integrative Orthologynegative regulation of chromatin silencingAT2G36490
GO:0080111ISOPLAZA Integrative OrthologyDNA demethylationAT2G36490

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0051539IEAInterPro4 iron, 4 sulfur cluster binding
GO:0003824IEAInterProcatalytic activity
GO:0019104ISOPLAZA Integrative OrthologyDNA N-glycosylase activityAT2G36490
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT2G36490
GO:0003906ISOPLAZA Integrative OrthologyDNA-(apurinic or apyrimidinic site) lyase activityAT2G36490

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G36490

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR003265HhH-GPD domain
IPR011257DNA glycosylase
IPR003651Endonuclease III-like, iron-sulphur cluster loop motif
IPR023170Helix-turn-helix, base-excision DNA repair, C-terminal

Mapman id Description
28.2DNA.repair
No SignalP domains detected for this gene.