Gene: PT05G23570 (Populus trichocarpa)

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Gene Identifier
PT05G23570
Transcript Identifier
PT05G23570.1
Gene Type
Coding gene
Location
Chr05 : 24321693-24322424 : negative

Family

Gene family
HOM03M000179
(275 genes in 16 species)
specific family
Subfamily
ORTHO03M000081
(34 genes in 13 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

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Descriptions

Description (AnnoMine)
Histone H3
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.005G235700.1
idPAC:27030988

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006334IEAGenome Projectnucleosome assembly
GO:0071824IEAPLAZA Homologyprotein-DNA complex subunit organizationHOM03M000179
GO:0071822IEAPLAZA Homologyprotein complex subunit organizationHOM03M000179
GO:0006325IEAPLAZA Homologychromatin organizationHOM03M000179
GO:0070271IEAPLAZA Homologyprotein complex biogenesisHOM03M000179
GO:0006323IEAPLAZA HomologyDNA packagingHOM03M000179
GO:0043933IEAPLAZA Homologymacromolecular complex subunit organizationHOM03M000179
GO:0031497IEAPLAZA Homologychromatin assemblyHOM03M000179
GO:0006996IEAPLAZA Homologyorganelle organizationHOM03M000179
GO:0071103IEAPLAZA HomologyDNA conformation changeHOM03M000179
GO:0065003IEAPLAZA Homologymacromolecular complex assemblyHOM03M000179
GO:0065004IEAPLAZA Homologyprotein-DNA complex assemblyHOM03M000179
GO:0006333IEAPLAZA Homologychromatin assembly or disassemblyHOM03M000179
GO:0016043IEAPLAZA Homologycellular component organizationHOM03M000179
GO:0051276IEAPLAZA Homologychromosome organizationHOM03M000179
GO:0044085IEAPLAZA Homologycellular component biogenesisHOM03M000179
GO:0022607IEAPLAZA Homologycellular component assemblyHOM03M000179
GO:0034728IEAPLAZA Homologynucleosome organizationHOM03M000179
GO:0071840IEAPLAZA Homologycellular component organization or biogenesisHOM03M000179
GO:0034622IEAPLAZA Homologycellular macromolecular complex assemblyHOM03M000179
GO:0006259IEAPLAZA HomologyDNA metabolic processHOM03M000179
GO:0006461IEAPLAZA Homologyprotein complex assemblyHOM03M000179

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding
GO:0046982IEAInterProprotein heterodimerization activity
GO:0046983IEAPLAZA Homologyprotein dimerization activityHOM03M000179

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000786IEAGenome Projectnucleosome
GO:1990104IEAPLAZA HomologyDNA bending complexHOM03M000179
GO:0032993IEAPLAZA Homologyprotein-DNA complexHOM03M000179
GO:0043228IEAPLAZA Homologynon-membrane-bounded organelleHOM03M000179
GO:0000785IEAPLAZA HomologychromatinHOM03M000179
GO:0044815IEAPLAZA HomologyDNA packaging complexHOM03M000179
GO:0005694IEAPLAZA HomologychromosomeHOM03M000179
GO:0043234IEAPLAZA Homologyprotein complexHOM03M000179
GO:0043232IEAPLAZA Homologyintracellular non-membrane-bounded organelleHOM03M000179
GO:0044427IEAPLAZA Homologychromosomal partHOM03M000179
GO:0044422IEAPLAZA Homologyorganelle partHOM03M000179
GO:0044446IEAPLAZA Homologyintracellular organelle partHOM03M000179

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR000164Histone H3
IPR009072Histone-fold
IPR007125Histone core

Mapman id Description
28.1.3DNA.synthesis/chromatin structure.histone
28.1.3.2.3DNA.synthesis/chromatin structure.histone.core.H3
No SignalP domains detected for this gene.