Gene: PT05G11560 (Populus trichocarpa)

Overview top

Gene Identifier
PT05G11560
Transcript Identifier
PT05G11560.1
Gene Type
Coding gene
Location
Chr05 : 8919987-8920505 : positive

Family

Gene family
HOM03M000276
(197 genes in 16 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

Loading...please wait

Descriptions

Description (AnnoMine)
Histone H4
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.005G115600.1
idPAC:27027540

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006334IEAGenome Projectnucleosome assembly
GO:0009414ISOPLAZA Integrative Orthologyresponse to water deprivationAT1G07660 AT1G07820 AT2G28740 AT3G45930 AT3G46320 AT3G53730 AT5G59690 AT5G59970
GO:0071824IEAPLAZA Homologyprotein-DNA complex subunit organizationHOM03M000276
GO:0071822IEAPLAZA Homologyprotein complex subunit organizationHOM03M000276
GO:0006325IEAPLAZA Homologychromatin organizationHOM03M000276
GO:0006323IEAPLAZA HomologyDNA packagingHOM03M000276
GO:0070271IEAPLAZA Homologyprotein complex biogenesisHOM03M000276
GO:0043933IEAPLAZA Homologymacromolecular complex subunit organizationHOM03M000276
GO:0031497IEAPLAZA Homologychromatin assemblyHOM03M000276
GO:0006996IEAPLAZA Homologyorganelle organizationHOM03M000276
GO:0071103IEAPLAZA HomologyDNA conformation changeHOM03M000276
GO:0065003IEAPLAZA Homologymacromolecular complex assemblyHOM03M000276
GO:0065004IEAPLAZA Homologyprotein-DNA complex assemblyHOM03M000276
GO:0006333IEAPLAZA Homologychromatin assembly or disassemblyHOM03M000276
GO:0016043IEAPLAZA Homologycellular component organizationHOM03M000276
GO:0051276IEAPLAZA Homologychromosome organizationHOM03M000276
GO:0044085IEAPLAZA Homologycellular component biogenesisHOM03M000276
GO:0022607IEAPLAZA Homologycellular component assemblyHOM03M000276
GO:0034728IEAPLAZA Homologynucleosome organizationHOM03M000276
GO:0034622IEAPLAZA Homologycellular macromolecular complex assemblyHOM03M000276
GO:0006259IEAPLAZA HomologyDNA metabolic processHOM03M000276
GO:0006461IEAPLAZA Homologyprotein complex assemblyHOM03M000276

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding
GO:0046982IEAInterProprotein heterodimerization activity
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT1G07660
GO:0046983IEAPLAZA Homologyprotein dimerization activityHOM03M000276

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAGenome Projectnucleus
GO:0000786IEAGenome Projectnucleosome
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT1G07660 AT1G07820 AT2G28740 AT3G45930 AT3G46320 AT3G53730 AT5G59690 AT5G59970
GO:0005774ISOPLAZA Integrative Orthologyvacuolar membraneAT1G07660 AT1G07820 AT2G28740 AT3G45930 AT3G46320 AT3G53730 AT5G59690 AT5G59970
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT1G07660 AT1G07820 AT2G28740 AT3G45930 AT3G46320 AT3G53730 AT5G59690 AT5G59970
GO:0005829ISOPLAZA Integrative OrthologycytosolAT1G07660 AT1G07820 AT2G28740 AT3G45930 AT3G46320 AT3G53730 AT5G59690 AT5G59970
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT1G07660 AT1G07820 AT2G28740 AT3G45930 AT3G46320 AT3G53730 AT5G59690 AT5G59970
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT1G07660 AT1G07820 AT2G28740 AT3G45930 AT3G46320 AT3G53730 AT5G59690 AT5G59970
GO:0009579ISOPLAZA Integrative OrthologythylakoidAT1G07660 AT1G07820 AT2G28740 AT3G45930 AT3G46320 AT3G53730 AT5G59690 AT5G59970
GO:0005773ISOPLAZA Integrative OrthologyvacuoleAT5G59970
GO:1990104IEAPLAZA HomologyDNA bending complexHOM03M000276
GO:0032993IEAPLAZA Homologyprotein-DNA complexHOM03M000276
GO:0043228IEAPLAZA Homologynon-membrane-bounded organelleHOM03M000276
GO:0000785IEAPLAZA HomologychromatinHOM03M000276
GO:0044815IEAPLAZA HomologyDNA packaging complexHOM03M000276
GO:0005694IEAPLAZA HomologychromosomeHOM03M000276
GO:0043232IEAPLAZA Homologyintracellular non-membrane-bounded organelleHOM03M000276
GO:0044427IEAPLAZA Homologychromosomal partHOM03M000276

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001951Histone H4
IPR009072Histone-fold
IPR007125Histone core
IPR019809Histone H4, conserved site

Mapman id Description
28.1.3DNA.synthesis/chromatin structure.histone
No SignalP domains detected for this gene.