Gene: PT03G03110 (Populus trichocarpa)

Overview top

Gene Identifier
PT03G03110
Transcript Identifier
PT03G03110.1
Gene Type
Coding gene
Location
Chr03 : 3929059-3933532 : positive

Family

Gene family
HOM03M003314
(27 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine)
Formamidopyrimidine-DNA glycosylase
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.003G031100.1
idPAC:27000161

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006284IEAGenome Projectbase-excision repair
GO:0006289IEAGenome Projectnucleotide-excision repair
GO:0006281IEAInterProDNA repair
GO:0006979ISOPLAZA Integrative Orthologyresponse to oxidative stressAT1G52500

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003684IEAGenome Projectdamaged DNA binding
GO:0003906IEAGenome ProjectDNA-(apurinic or apyrimidinic site) lyase activity
GO:0008270IEAGenome Projectzinc ion binding
GO:0016799IEAGenome Projecthydrolase activity, hydrolyzing N-glycosyl compounds
GO:0008534IEAInterProoxidized purine nucleobase lesion DNA N-glycosylase activity
GO:0003676IEAInterPronucleic acid binding
GO:0019104ISOPLAZA Integrative OrthologyDNA N-glycosylase activityAT1G52500
GO:0000702IEAPLAZA Homologyoxidized base lesion DNA N-glycosylase activityHOM03M003314

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012319DNA glycosylase/AP lyase, catalytic domain
IPR000191DNA glycosylase/AP lyase
IPR010979Ribosomal protein S13-like, H2TH
IPR015886DNA glycosylase/AP lyase, H2TH DNA-binding

Mapman id Description
28.2DNA.repair
No SignalP domains detected for this gene.