Gene: PT02G18140 (Populus trichocarpa)

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Gene Identifier
PT02G18140
Transcript Identifier
PT02G18140.1
Gene Type
Coding gene
Location
Chr02 : 14159753-14170218 : negative

Family

Gene family
HOM03M000334
(174 genes in 15 species)
specific family
Subfamily
ORTHO03M002980
(8 genes in 8 species)
specific family

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Descriptions

Description (AnnoMine)
Endoribonuclease Dicer homolog
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.002G181400.1
idPAC:27024150

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006396IEAGenome ProjectRNA processing
GO:0035196ISOPLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNAOS03G02970 AT1G01040
GO:0007275ISOPLAZA Integrative Orthologymulticellular organismal developmentOS03G02970
GO:0010228ISOPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT1G01040
GO:0009908ISOPLAZA Integrative Orthologyflower developmentAT1G01040
GO:0009880ISOPLAZA Integrative Orthologyembryonic pattern specificationAT1G01040
GO:2000034ISOPLAZA Integrative Orthologyregulation of seed maturationAT1G01040
GO:0010599ISOPLAZA Integrative Orthologyproduction of lsiRNA involved in RNA interferenceAT1G01040
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT1G01040
GO:0009616ISOPLAZA Integrative Orthologyvirus induced gene silencingAT1G01040
GO:0010267ISOPLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interferenceAT1G01040
GO:0031053ISOPLAZA Integrative Orthologyprimary miRNA processingAT1G01040
GO:0035279ISOPLAZA Integrative OrthologymRNA cleavage involved in gene silencing by miRNAAT1G01040
GO:0000910ISOPLAZA Integrative OrthologycytokinesisAT1G01040
GO:0010098ISOPLAZA Integrative Orthologysuspensor developmentAT1G01040

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003725IEAGenome Projectdouble-stranded RNA binding
GO:0003676IEAGenome Projectnucleic acid binding
GO:0005524IEAGenome ProjectATP binding
GO:0008026IEAGenome ProjectATP-dependent helicase activity
GO:0004386IEAGenome Projecthelicase activity
GO:0003723IEAGenome ProjectRNA binding
GO:0004525IEAGenome Projectribonuclease III activity
GO:0005515IEAGenome Projectprotein binding
GO:0016891IEAGenome Projectendoribonuclease activity, producing 5'-phosphomonoesters
GO:0003677IEAGenome ProjectDNA binding
GO:0016787IEAGenome Projecthydrolase activity
GO:0016893IEAPLAZA Homologyendonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoestersHOM03M000334
GO:0004521IEAPLAZA Homologyendoribonuclease activityHOM03M000334

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005622IEAGenome Projectintracellular
GO:0010445ISOPLAZA Integrative Orthologynuclear dicing bodyAT1G01040
GO:0005634ISOPLAZA Integrative OrthologynucleusAT1G01040

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000999Ribonuclease III domain
IPR005034Dicer dimerisation domain
IPR011545DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR014720Double-stranded RNA-binding domain
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR001650Helicase, C-terminal
IPR003100Argonaute/Dicer protein, PAZ domain

Mapman id Description
27.1.20RNA.processing.degradation dicer
No SignalP domains detected for this gene.