PLAZA 3.0 Monocots gene overview : PT00G01880

Gene: PT00G01880 (Populus trichocarpa)

Overview

Gene Identifier: PT00G01880
Transcript Identifier: PT00G01880.1
Gene Type: Coding gene
Location: scaffold_29 : 91444-95235 : positive

Family

Gene family: HOM03M000010
(2061 genes in 14 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description (AnnoMine): lectin S-receptor-like serine/threonine-protein kinase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Potri.T021100.1
id	PAC:26989001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006468	IEA	Genome Project	protein phosphorylation
GO:0048544	IEA	Genome Project	recognition of pollen
GO:0044260	IEA	PLAZA Homology	cellular macromolecule metabolic process	HOM03M000010
GO:0006796	IEA	PLAZA Homology	phosphate-containing compound metabolic process	HOM03M000010
GO:0006793	IEA	PLAZA Homology	phosphorus metabolic process	HOM03M000010
GO:0043170	IEA	PLAZA Homology	macromolecule metabolic process	HOM03M000010
GO:0044237	IEA	PLAZA Homology	cellular metabolic process	HOM03M000010
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03M000010
GO:0009987	IEA	PLAZA Homology	cellular process	HOM03M000010
GO:0016310	IEA	PLAZA Homology	phosphorylation	HOM03M000010
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000010
GO:0043412	IEA	PLAZA Homology	macromolecule modification	HOM03M000010
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03M000010
GO:0044267	IEA	PLAZA Homology	cellular protein metabolic process	HOM03M000010
GO:0019538	IEA	PLAZA Homology	protein metabolic process	HOM03M000010
GO:0036211	IEA	PLAZA Homology	protein modification process	HOM03M000010
GO:0006464	IEA	PLAZA Homology	cellular protein modification process	HOM03M000010

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004672	IEA	Genome Project	protein kinase activity
GO:0005524	IEA	Genome Project	ATP binding
GO:0030246	IEA	Genome Project	carbohydrate binding
GO:0004674	IEA	Genome Project	protein serine/threonine kinase activity
GO:0016772	IEA	InterPro	transferase activity, transferring phosphorus-containing groups
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03M000010
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03M000010
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03M000010
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03M000010
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03M000010
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03M000010
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000010
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03M000010
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000010
GO:0000166	IEA	PLAZA Homology	nucleotide binding	HOM03M000010
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03M000010
GO:0016301	IEA	PLAZA Homology	kinase activity	HOM03M000010
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03M000010
GO:0016773	IEA	PLAZA Homology	phosphotransferase activity, alcohol group as acceptor	HOM03M000010
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03M000010
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000010
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03M000010
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03M000010
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000010
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000010
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03M000010
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03M000010
GO:0016740	IEA	PLAZA Homology	transferase activity	HOM03M000010

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002290	Serine/threonine- / dual specificity protein kinase, catalytic domain
IPR000719	Protein kinase domain
IPR003609	Apple-like
IPR001480	Bulb-type lectin domain
IPR021820	S-locus receptor kinase, C-terminal
IPR008271	Serine/threonine-protein kinase, active site
IPR013227	PAN-2 domain
IPR011009	Protein kinase-like domain
IPR013320	Concanavalin A-like lectin/glucanase, subgroup
IPR000858	S-locus glycoprotein

Mapman id	Description
30.2.17	signalling.receptor kinases.DUF 26
30.2.24	signalling.receptor kinases.S-locus glycoprotein like

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network