Gene: PP00104G00140 (Physcomitrella patens)

Overview top

Gene Identifier
PP00104G00140
Transcript Identifier
PP00104G00140.1
Gene Type
Coding gene
Location
scaffold_104 : 292834-296399 : negative

Family

Gene family
HOM03M000089
(508 genes in 14 species)
specific family

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Descriptions

Description (AnnoMine)
Probable polygalacturonase At1g80170
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPp1s104_31V6.1
idPAC:18044013

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975IEAGenome Projectcarbohydrate metabolic process
GO:0010047ISOPLAZA Integrative Orthologyfruit dehiscenceAT3G57510 AT3G07970 AT2G41850
GO:0009901ISOPLAZA Integrative Orthologyanther dehiscenceAT3G57510 AT3G07970 AT2G41850
GO:0009830ISOPLAZA Integrative Orthologycell wall modification involved in abscissionAT3G57510 AT3G07970 AT2G41850
GO:0045490ISOPLAZA Integrative Orthologypectin catabolic processAT3G07970
GO:0048235ISOPLAZA Integrative Orthologypollen sperm cell differentiationAT3G07970
GO:0010227ISOPLAZA Integrative Orthologyfloral organ abscissionAT2G41850
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03M000089

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650IEAGenome Projectpolygalacturonase activity
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03M000089
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03M000089
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03M000089

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006626Parallel beta-helix repeat
IPR000743Glycoside hydrolase, family 28
IPR012334Pectin lyase fold
IPR011050Pectin lyase fold/virulence factor

Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
No SignalP domains detected for this gene.