Gene: PP00069G00200 (Physcomitrella patens)

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Gene Identifier
PP00069G00200
Transcript Identifier
PP00069G00200.1
Gene Type
Coding gene
Location
scaffold_69 : 242236-245262 : negative

Family

Gene family
HOM03M000047
(829 genes in 14 species)
specific family
Subfamily
ORTHO03M004237
(7 genes in 5 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

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Descriptions

Description (AnnoMine)
Transcription factor PIF3
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPp1s69_37V6.1
idPAC:18049498

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:0010047ISOPLAZA Integrative Orthologyfruit dehiscenceAT5G67110
GO:0010017ISOPLAZA Integrative Orthologyred or far-red light signaling pathwayAT2G46970 AT1G09530
GO:0009641ISOPLAZA Integrative Orthologyshade avoidanceAT2G46970
GO:0006783ISOPLAZA Integrative Orthologyheme biosynthetic processAT2G20180
GO:0010161ISOPLAZA Integrative Orthologyred light signaling pathwayAT2G20180
GO:0010100ISOPLAZA Integrative Orthologynegative regulation of photomorphogenesisAT2G20180
GO:0009740ISOPLAZA Integrative Orthologygibberellic acid mediated signaling pathwayAT2G20180 AT1G09530
GO:0010099ISOPLAZA Integrative Orthologyregulation of photomorphogenesisAT2G20180
GO:0010029ISOPLAZA Integrative Orthologyregulation of seed germinationAT2G20180
GO:0009959ISOPLAZA Integrative Orthologynegative gravitropismAT2G20180
GO:0010187ISOPLAZA Integrative Orthologynegative regulation of seed germinationAT2G20180
GO:0015995ISOPLAZA Integrative Orthologychlorophyll biosynthetic processAT2G20180
GO:0007165ISOPLAZA Integrative Orthologysignal transductionAT1G09530
GO:0009704ISOPLAZA Integrative Orthologyde-etiolationAT1G09530
GO:0031539ISOPLAZA Integrative Orthologypositive regulation of anthocyanin metabolic processAT1G09530
GO:0009639ISOPLAZA Integrative Orthologyresponse to red or far red lightAT1G09530

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0046983IEAInterProprotein dimerization activity
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT2G46970 AT2G20180 AT1G09530
GO:0042802ISOPLAZA Integrative Orthologyidentical protein bindingAT2G20180 AT1G09530
GO:0003677ISOPLAZA Integrative OrthologyDNA bindingAT2G20180 AT1G09530
GO:0003700ISOPLAZA Integrative Orthologysequence-specific DNA binding transcription factor activityAT2G20180
GO:0010313ISOPLAZA Integrative Orthologyphytochrome bindingAT2G20180

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusOS07G05010 OS03G43810 AT5G67110 AT2G20180 AT1G09530

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
IPR024097Basic helix-loop-helix leucine zipper transcription factor
IPR024102Basic helix-loop-helix leucine zipper transcription factor, plant

Mapman id Description
27.3.6RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBbHLH
PlantTFDBbHLH