Gene: PP00047G01570 (Physcomitrella patens)

Overview top

Gene Identifier
PP00047G01570
Transcript Identifier
PP00047G01570.1
Gene Type
Coding gene
Location
scaffold_47 : 1929449-1934718 : positive

Family

Gene family
HOM03M002094
(39 genes in 15 species)
specific family

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Descriptions

Description (AnnoMine)
Putative E3 ubiquitin-protein ligase ORTHRUS 4
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPp1s47_310V6.1
idPAC:18045219

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0090309ISOPLAZA Integrative Orthologypositive regulation of methylation-dependent chromatin silencingAT5G39550 AT1G66040 AT1G57820
GO:0010424ISOPLAZA Integrative OrthologyDNA methylation on cytosine within a CG sequenceAT5G39550 AT1G57820
GO:0016567ISOPLAZA Integrative Orthologyprotein ubiquitinationAT5G39550 AT4G08590 AT1G57820
GO:0010228ISOPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT5G39550
GO:0032776ISOPLAZA Integrative OrthologyDNA methylation on cytosineAT5G39550 AT1G57820
GO:0051301ISOPLAZA Integrative Orthologycell divisionAT1G57820
GO:0006325ISOPLAZA Integrative Orthologychromatin organizationAT1G57820
GO:0031508ISOPLAZA Integrative Orthologycentromeric heterochromatin assemblyAT1G57820

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAGenome Projectprotein binding
GO:0042393IEAGenome Projecthistone binding
GO:0008270IEAInterProzinc ion binding
GO:0046872IEAInterPrometal ion binding
GO:0004842ISOPLAZA Integrative Orthologyubiquitin-protein ligase activityAT5G39550 AT4G08590 AT1G66040 AT1G57820
GO:0010429ISOPLAZA Integrative Orthologymethyl-CpNpN bindingAT5G39550 AT1G57820
GO:0010428ISOPLAZA Integrative Orthologymethyl-CpNpG bindingAT5G39550 AT1G57820
GO:0008327ISOPLAZA Integrative Orthologymethyl-CpG bindingAT5G39550 AT1G57820
GO:0010385ISOPLAZA Integrative Orthologydouble-stranded methylated DNA bindingAT1G57820
GO:0003682ISOPLAZA Integrative Orthologychromatin bindingAT1G57820

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT5G39550 AT1G66040 AT1G57820
GO:0005737ISOPLAZA Integrative OrthologycytoplasmAT4G08590
GO:0010369ISOPLAZA Integrative OrthologychromocenterAT1G57820

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001841Zinc finger, RING-type
IPR003105SRA-YDG
IPR001965Zinc finger, PHD-type
IPR017907Zinc finger, RING-type, conserved site
IPR018957Zinc finger, C3HC4 RING-type
IPR011011Zinc finger, FYVE/PHD-type
IPR019786Zinc finger, PHD-type, conserved site
IPR019787Zinc finger, PHD-finger
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR015947PUA-like domain

Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
No SignalP domains detected for this gene.