Gene: PP00016G00330 (Physcomitrella patens)

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Gene Identifier
PP00016G00330
Transcript Identifier
PP00016G00330.1
Gene Type
Coding gene
Location
scaffold_16 : 390221-392603 : positive

Family

Gene family
HOM03M000089
(508 genes in 14 species)
specific family
Subfamily
ORTHO03M004625
(7 genes in 7 species)
specific family

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Descriptions

Description (AnnoMine)
Probable polygalacturonase At1g80170
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPp1s16_66V6.1
idPAC:18055583

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975IEAGenome Projectcarbohydrate metabolic process
GO:0080159ISOPLAZA Integrative Orthologyzygote elongationAT2G33160
GO:0010098ISOPLAZA Integrative Orthologysuspensor developmentAT2G33160
GO:0009793ISOPLAZA Integrative Orthologyembryo development ending in seed dormancyAT2G33160
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03M000089

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650IEAGenome Projectpolygalacturonase activity
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03M000089
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03M000089
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03M000089

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009505ISOPLAZA Integrative Orthologyplant-type cell wallAT3G07830
GO:0005618ISOPLAZA Integrative Orthologycell wallAT2G33160
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT1G65570

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006626Parallel beta-helix repeat
IPR011050Pectin lyase fold/virulence factor
IPR012334Pectin lyase fold
IPR000743Glycoside hydrolase, family 28

Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network