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WorkbenchGene: PP00001G02370 (Physcomitrella patens)
Overview 
- Gene Identifier
- PP00001G02370
- Transcript Identifier
- PP00001G02370.1
- Gene Type
- Coding gene
- Location
- scaffold_1 : 2971176-2974122 : negative
Family
- Gene family
Descriptions
- Description (AnnoMine)
-
Tyrosine--tRNA ligase
Description of best ortholog(s):
Identifiers
| Identifier | Name |
|---|---|
| pid | Pp1s1_515V6.1 |
| id | PAC:18069561 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0006412 | IEA | Genome Project | translation | |
| GO:0006418 | IEA | Genome Project | tRNA aminoacylation for protein translation | |
| GO:0006437 | IEA | Genome Project | tyrosyl-tRNA aminoacylation | |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT3G02660 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0000166 | IEA | Genome Project | nucleotide binding | |
| GO:0004812 | IEA | Genome Project | aminoacyl-tRNA ligase activity | |
| GO:0005524 | IEA | Genome Project | ATP binding | |
| GO:0003723 | IEA | Genome Project | RNA binding | |
| GO:0004831 | IEA | Genome Project | tyrosine-tRNA ligase activity |
Cellular Component
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0005737 | IEA | Genome Project | cytoplasm | |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT3G02660 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT3G02660 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT3G02660 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| InterPro | Description |
|---|---|
| IPR002307 | Tyrosine-tRNA ligase |
| IPR002305 | Aminoacyl-tRNA synthetase, class Ic |
| IPR002942 | RNA-binding S4 domain |
| IPR024088 | Tyrosine-tRNA ligase, bacterial-type |
| IPR001412 | Aminoacyl-tRNA synthetase, class I, conserved site |
| IPR024107 | Tyrosine-tRNA ligase, bacterial-type, type 1 |
| IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
| Mapman id | Description |
|---|---|
| 29.1.1 | protein.aa activation.tyrosine-tRNA ligase |
No SignalP domains detected for this gene.