Gene: PP00001G01530 (Physcomitrella patens)

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Gene Identifier
PP00001G01530
Transcript Identifier
PP00001G01530.1
Gene Type
Coding gene
Location
scaffold_1 : 2202470-2205911 : negative

Family

Gene family
HOM03M001022
(71 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine)
repeat-binding factor 5
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPp1s1_349V6.1
idPAC:18069835

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006334IEAGenome Projectnucleosome assembly
GO:0009651ISOPLAZA Integrative Orthologyresponse to salt stressAT1G17520 AT1G49950 AT3G49850 AT5G67580
GO:0009723ISOPLAZA Integrative Orthologyresponse to ethyleneAT1G17520 AT1G49950 AT3G49850 AT5G67580
GO:0009733ISOPLAZA Integrative Orthologyresponse to auxinAT1G17520 AT1G49950 AT3G49850 AT5G67580
GO:0009751ISOPLAZA Integrative Orthologyresponse to salicylic acidAT1G17520 AT1G49950 AT3G49850 AT5G67580
GO:0009753ISOPLAZA Integrative Orthologyresponse to jasmonic acidAT1G17520 AT1G49950 AT3G49850 AT5G67580
GO:0046686ISOPLAZA Integrative Orthologyresponse to cadmium ionAT1G17520 AT1G49950 AT3G49850 AT5G67580
GO:0009737ISOPLAZA Integrative Orthologyresponse to abscisic acidAT1G49950 AT5G67580
GO:0009739ISOPLAZA Integrative Orthologyresponse to gibberellin stimulusAT1G49950 AT3G49850 AT5G67580
GO:0010150ISOPLAZA Integrative Orthologyleaf senescenceAT3G49850
GO:0034728IEAPLAZA Homologynucleosome organizationHOM03M001022

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding
GO:0003682IEAInterProchromatin binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT1G49950 AT3G49850 AT5G67580
GO:0042803ISOPLAZA Integrative Orthologyprotein homodimerization activityAT1G49950 AT3G49850 AT5G67580
GO:0003691ISOPLAZA Integrative Orthologydouble-stranded telomeric DNA bindingAT1G49950 AT3G49850 AT5G67580
GO:0043047ISOPLAZA Integrative Orthologysingle-stranded telomeric DNA bindingAT3G49850 AT5G67580
GO:0042162ISOPLAZA Integrative Orthologytelomeric DNA bindingAT5G67580

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000786IEAGenome Projectnucleosome
GO:0005634IEAGenome Projectnucleus
GO:1990104IEAPLAZA HomologyDNA bending complexHOM03M001022

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001005SANT/Myb domain
IPR011991Winged helix-turn-helix DNA-binding domain
IPR009057Homeodomain-like
IPR005818Linker histone H1/H5, domain H15
IPR017930Myb domain

Mapman id Description
27.3.26RNA.regulation of transcription.MYB-related transcription factor family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBMYB-related
PlantTFDBMYB_related