PLAZA 3.0 Monocots gene overview : OSINDICA_06G13160

Gene: OSINDICA_06G13160 (Oryza sativa ssp. indica)

Overview

Gene Identifier: OSINDICA_06G13160
Transcript Identifier: OSINDICA_06G13160.1
Gene Type: Coding gene
Location: Chr06 : 8581643-8593584 : positive

Family

Gene family: HOM03M001299
(58 genes in 16 species)
specific family

Loading...please wait

Descriptions

Description: Probable alanine--tRNA ligase, chloroplastic

Description (AnnoMine): Alanine--tRNA ligase

Identifiers

Identifier	Name
name	OsIFCC010057
uniprot	B8B4H5

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006419	IEA	UniProt	alanyl-tRNA aminoacylation	1
GO:0009793	IEA	UniProt	embryo development ending in seed dormancy	1
GO:0006355	IEA	InterPro	regulation of transcription, DNA-dependent
GO:0043039	IEA	InterPro	tRNA aminoacylation

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004813	IEA	UniProt	alanine-tRNA ligase activity	1
GO:0005524	IEA	UniProt	ATP binding	1
GO:0000049	IEA	UniProt	tRNA binding	1
GO:0008270	IEA	UniProt	zinc ion binding	1
GO:0003700	IEA	InterPro	sequence-specific DNA binding transcription factor activity
GO:0000166	IEA	InterPro	nucleotide binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0016876	IEA	InterPro	ligase activity, forming aminoacyl-tRNA and related compounds

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009570	IEA	UniProt	chloroplast stroma	1
GO:0016020	IEA	UniProt	membrane	1
GO:0005739	IEA	UniProt	mitochondrion	1
GO:0005667	IEA	InterPro	transcription factor complex
GO:0005737	IEA	InterPro	cytoplasm
GO:0009507	IEA	InterPro	chloroplast

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR012947	Threonyl/alanyl tRNA synthetase, SAD
IPR002318	Alanine-tRNA ligase, class IIc
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR003156	Phosphoesterase, DHHA1
IPR003316	Transcription factor E2F/dimerisation partner (TDP)
IPR023033	Alanine-tRNA ligase, eukaryota/bacteria
IPR018163	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain
IPR027522	Probable alanine--tRNA ligase, plants
IPR018165	Alanyl-tRNA synthetase, class IIc, core domain
IPR018164	Alanyl-tRNA synthetase, class IIc, N-terminal
IPR009000	Translation protein, beta-barrel domain
IPR018162	Alanine-tRNA ligase, class IIc, anti-codon-binding domain

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.

Database	Type
PlnTFDB	E2F-DP