PLAZA 3.0 Monocots gene overview : OSINDICA_00G27240

Gene: OSINDICA_00G27240 (Oryza sativa ssp. indica)

Overview

Gene Identifier: OSINDICA_00G27240
Transcript Identifier: OSINDICA_00G27240.1
Gene Type: Coding gene
Location: Scaffold013518 : 2920-6080 : negative

Family

Gene family: HOM03M020376
(orphan gene)
specific family

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Descriptions

Description (AnnoMine): protein GlmU

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
name	OsIFSC046851

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009252	IEA	InterPro	peptidoglycan biosynthetic process
GO:0000902	IEA	InterPro	cell morphogenesis
GO:0006355	IEA	InterPro	regulation of transcription, DNA-dependent
GO:0009103	IEA	InterPro	lipopolysaccharide biosynthetic process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003700	IEA	InterPro	sequence-specific DNA binding transcription factor activity
GO:0003977	IEA	InterPro	UDP-N-acetylglucosamine diphosphorylase activity
GO:0000287	IEA	InterPro	magnesium ion binding
GO:0019134	IEA	InterPro	glucosamine-1-phosphate N-acetyltransferase activity
GO:0003677	IEA	InterPro	DNA binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005622	IEA	InterPro	intracellular
GO:0005737	IEA	InterPro	cytoplasm

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR021317	Protein of unknown function DUF2917
IPR001451	Bacterial transferase hexapeptide repeat
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR025877	MobA-like NTP transferase domain
IPR005882	Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase
IPR001808	Transcription regulator HTH, Crp
IPR000595	Cyclic nucleotide-binding domain
IPR011004	Trimeric LpxA-like
IPR018490	Cyclic nucleotide-binding-like
IPR012318	Helix-turn-helix motif, Crp-type
IPR014710	RmlC-like jelly roll fold

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.