Gene: OS10G21950 (Oryza sativa ssp. japonica)

Overview top

Gene Identifier
OS10G21950
Transcript Identifier
OS10G21950.1
Gene Type
Transposon
Location
10 : 11323706-11335058 : negative

Family

No gene family defined for this gene.

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Descriptions

Description
retrotransposon protein, putative, Ty1-copia subclass, expressed

Identifiers

Identifier Name
transcript_idLOC_OS10G21950.1

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  • ...the colinearity of this gene with other genomes.
  • ...the local gene organization for homologous genes.
  • ...the phylogenetic tree of the homologous gene family.
  • ...the orthologs using the Integrative Orthology Viewer.
  • ...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006952IEAInterProdefense response
GO:0015074IEAInterProDNA integration

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0043531IEAInterProADP binding
GO:0008270IEAInterProzinc ion binding
GO:0003676IEAInterPronucleic acid binding

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001878Zinc finger, CCHC-type
IPR002182NB-ARC
IPR001584Integrase, catalytic core
IPR012337Ribonuclease H-like domain
IPR000767Disease resistance protein
IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR025724GAG-pre-integrase domain

Mapman id Description
20.1stress.biotic
No SignalP domains detected for this gene.