Gene: OS10G17560 (Oryza sativa ssp. japonica)

Overview top

Gene Identifier
OS10G17560
Transcript Identifier
OS10G17560.1
Gene Type
Transposon
Location
10 : 8854626-8860332 : negative

Family

No gene family defined for this gene.

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Descriptions

Description
retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Identifiers

Identifier Name
transcript_idLOC_OS10G17560.1

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  • ...the colinearity of this gene with other genomes.
  • ...the local gene organization for homologous genes.
  • ...the phylogenetic tree of the homologous gene family.
  • ...the orthologs using the Integrative Orthology Viewer.
  • ...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006278RCA, IEAGene OntologyRNA-dependent DNA replicationGR_REF:8030
GO:0006310RCAGene OntologyDNA recombinationGR_REF:8030
GO:0006508RCA, IEAGene OntologyproteolysisGR_REF:8030
GO:0015074IEAInterProDNA integration

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677RCAGene OntologyDNA bindingGR_REF:8030
GO:0003723RCA, IEAGene OntologyRNA bindingGR_REF:8030
GO:0003964RCA, IEAGene OntologyRNA-directed DNA polymerase activityGR_REF:8030
GO:0004190RCA, IEAGene Ontologyaspartic-type endopeptidase activityGR_REF:8030
GO:0008270IEAInterProzinc ion binding
GO:0003676IEAInterPronucleic acid binding

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR023780Chromo domain
IPR001878Zinc finger, CCHC-type
IPR016197Chromo domain-like
IPR000477Reverse transcriptase
IPR001584Integrase, catalytic core
IPR012337Ribonuclease H-like domain
IPR001969Aspartic peptidase, active site
IPR021109Aspartic peptidase domain
IPR013242Retroviral aspartyl protease
IPR005162Retrotransposon gag domain

Mapman id Description
27.2RNA.transcription
No SignalP domains detected for this gene.