PLAZA 3.0 Monocots gene overview : OS07G34880

Gene: OS07G34880 (Oryza sativa ssp. japonica)

Overview

Gene Identifier: OS07G34880
Transcript Identifier: OS07G34880.1
Gene Type: Coding gene
Location: 7 : 20904213-20905832 : positive

Family

Gene family: HOM03M001172
(62 genes in 13 species)
specific family

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Descriptions

Description: homeobox domain containing protein, expressed

Description: WUSCHEL-related homeobox 13

Description (AnnoMine): related homeobox 13

Identifiers

Identifier	Name
transcript_id	LOC_OS07G34880.1
uniprot	A3BKM2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007275	IEA	UniProt	multicellular organismal development	1 2 3
GO:0006351	IEA	UniProt	transcription, DNA-templated	1 2 3
GO:0006355	IEA	InterPro	regulation of transcription, DNA-dependent
GO:0090451	ISO	PLAZA Integrative Orthology	cotyledon boundary formation	AT5G45980
GO:0030010	ISO	PLAZA Integrative Orthology	establishment of cell polarity	AT5G45980
GO:0048825	ISO	PLAZA Integrative Orthology	cotyledon development	AT5G45980
GO:0009793	ISO	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT5G45980 AT2G33880
GO:0008284	ISO	PLAZA Integrative Orthology	positive regulation of cell proliferation	AT5G45980 AT2G33880
GO:0009735	ISO	PLAZA Integrative Orthology	response to cytokinin	AT2G33880
GO:0010075	ISO	PLAZA Integrative Orthology	regulation of meristem growth	AT2G33880
GO:2001141	IEA	PLAZA Homology	regulation of RNA biosynthetic process	HOM03M001172

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0043565	IEA	UniProt	sequence-specific DNA binding	1 2 3
GO:0003700	IEA	UniProt	sequence-specific DNA binding transcription factor activity	1 2 3
GO:0003677	IEA	InterPro	DNA binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	UniProt	nucleus	1 2 3
GO:0005737	ISO	PLAZA Integrative Orthology	cytoplasm	AT2G33880

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001356	Homeobox domain
IPR009057	Homeodomain-like

Mapman id	Description
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family

No SignalP domains detected for this gene.

Database	Type
PlnTFDB	HB
PlantTFDB	WOX