PLAZA 3.0 Monocots gene overview : OS06G16370

Gene: OS06G16370 (Oryza sativa ssp. japonica)

Overview

Gene Identifier: OS06G16370
Transcript Identifier: OS06G16370.1
Gene Type: Coding gene
Location: 6 : 9336535-9338359 : positive

Family

Gene family: HOM03M000253
(208 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: CCT%2FB-box zinc finger protein, putative, expressed

Description: Zinc finger protein HD1

Description (AnnoMine): finger protein HD1

Identifiers

Identifier	Name
transcript_id	LOC_OS06G16370.1
uniprot	Q9FDX8

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0010229	IGI	UniProt	inflorescence development	GR_REF:51271 2 3 4 5 6 7
GO:0048571	IGI, IEP	UniProt	long-day photoperiodism	GR_REF:51271 GR_REF:51272 3 4 5 6 7 8
GO:0048572	IGI, IEP	UniProt	short-day photoperiodism	GR_REF:51271 GR_REF:51272 3 4 5 6 7 8
GO:0009648	IC	Gene Ontology	photoperiodism	GR_REF:11089
GO:0030154	IEA	UniProt	cell differentiation	1 2 3 4 5 6
GO:0009908	IEA	UniProt	flower development	1 2 3 4 5 6
GO:0048579	IMP	UniProt	negative regulation of long-day photoperiodism, flowering	1 2 3 4 5 6
GO:0045892	IMP	UniProt	negative regulation of transcription, DNA-dependent	1 2 3 4 5 6
GO:0048576	IMP	UniProt	positive regulation of short-day photoperiodism, flowering	1 2 3 4 5 6
GO:0009909	IMP	UniProt	regulation of flower development	1 2 3 4 5 6
GO:0006351	IEA	UniProt	transcription, DNA-templated	1 2 3 4 5 6
GO:0007623	ISO	PLAZA Integrative Orthology	circadian rhythm	AT5G15850 AT5G15840
GO:0010218	ISO	PLAZA Integrative Orthology	response to far red light	AT5G15840
GO:0010018	ISO	PLAZA Integrative Orthology	far-red light signaling pathway	AT5G15840
GO:0009658	ISO	PLAZA Integrative Orthology	chloroplast organization	AT3G02380

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA, ISS, RCA	UniProt	DNA binding	GR_REF:51271 GR_REF:80302 3 4 5 6 7
GO:0003700	ISS	UniProt	sequence-specific DNA binding transcription factor activity	GR_REF:51271 2 3 4 5 6 7
GO:0008270	IEA, ISS, RCA	UniProt	zinc ion binding	GR_REF:51271 GR_REF:80302 3 4 5 6 7
GO:0005515	IEA	InterPro	protein binding
GO:0042802	ISO	PLAZA Integrative Orthology	identical protein binding	AT5G15850

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA, ISS	UniProt	nucleus	GR_REF:51271 2 3 4 5 6 7
GO:0005622	IEA	InterPro	intracellular

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR010402	CCT domain
IPR000315	Zinc finger, B-box

Mapman id	Description
33.99	development.unspecified

No SignalP domains detected for this gene.

Database	Type
PlnTFDB	C2C2-CO-like
PlantTFDB	CO-like