Gene: OS06G08480 (Oryza sativa ssp. japonica)

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Gene Identifier
OS06G08480
Transcript Identifier
OS06G08480.1
Gene Type
Coding gene
Location
6 : 4167574-4182328 : negative

Family

Gene family
HOM03M000104
(463 genes in 16 species)
specific family
Subfamily
ORTHO03M005817
(6 genes in 5 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
CHD3-type chromatin-remodeling factor PICKLE, putative, expressed
Description (AnnoMine)
CHD3-type chromatin-remodeling factor PICKLE

Identifiers

Identifier Name
transcript_idLOC_OS06G08480.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0048364ISOPLAZA Integrative Orthologyroot developmentAT2G25170
GO:0009739ISOPLAZA Integrative Orthologyresponse to gibberellin stimulusAT2G25170
GO:0008283ISOPLAZA Integrative Orthologycell proliferationAT2G25170
GO:0009788ISOPLAZA Integrative Orthologynegative regulation of abscisic acid-activated signaling pathwayAT2G25170
GO:2000023ISOPLAZA Integrative Orthologyregulation of lateral root developmentAT2G25170
GO:0009733ISOPLAZA Integrative Orthologyresponse to auxinAT2G25170
GO:0009736ISOPLAZA Integrative Orthologycytokinin-activated signaling pathwayAT2G25170
GO:0045892ISOPLAZA Integrative Orthologynegative regulation of transcription, DNA-dependentAT2G25170

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004386IEAInterProhelicase activity
GO:0003676IEAInterPronucleic acid binding
GO:0003677IEAInterProDNA binding
GO:0005524IEAInterProATP binding
GO:0032555IEAPLAZA Homologypurine ribonucleotide bindingHOM03M000104
GO:0016817IEAPLAZA Homologyhydrolase activity, acting on acid anhydridesHOM03M000104
GO:0032553IEAPLAZA Homologyribonucleotide bindingHOM03M000104
GO:0035639IEAPLAZA Homologypurine ribonucleoside triphosphate bindingHOM03M000104
GO:0097367IEAPLAZA Homologycarbohydrate derivative bindingHOM03M000104
GO:0016818IEAPLAZA Homologyhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesHOM03M000104
GO:0032559IEAPLAZA Homologyadenyl ribonucleotide bindingHOM03M000104
GO:0016462IEAPLAZA Homologypyrophosphatase activityHOM03M000104
GO:0030554IEAPLAZA Homologyadenyl nucleotide bindingHOM03M000104
GO:0001882IEAPLAZA Homologynucleoside bindingHOM03M000104
GO:0017076IEAPLAZA Homologypurine nucleotide bindingHOM03M000104
GO:0017111IEAPLAZA Homologynucleoside-triphosphatase activityHOM03M000104
GO:0032549IEAPLAZA Homologyribonucleoside bindingHOM03M000104
GO:0001883IEAPLAZA Homologypurine nucleoside bindingHOM03M000104
GO:0032550IEAPLAZA Homologypurine ribonucleoside bindingHOM03M000104

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G25170

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009463Domain of unknown function DUF1087
IPR000953Chromo domain/shadow
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR023780Chromo domain
IPR001650Helicase, C-terminal
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR016197Chromo domain-like
IPR009462Domain of unknown function DUF1086
IPR000330SNF2-related

Mapman id Description
27.3.44RNA.regulation of transcription.Chromatin Remodeling Factors
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBSNF2