Gene: OS06G05350 (Oryza sativa ssp. japonica)

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Gene Identifier
OS06G05350
Transcript Identifier
OS06G05350.1
Gene Type
Coding gene
Location
6 : 2405467-2407866 : positive

Family

Gene family
HOM03M002616
(33 genes in 15 species)
specific family
Subfamily
ORTHO03M006199
(6 genes in 6 species)
specific family

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Descriptions

Description
whirly transcription factor domain containing protein, expressed
Description (AnnoMine)
DNA-binding protein WHY1, chloroplastic

Identifiers

Identifier Name
transcript_idLOC_OS06G05350.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0006281ISOPLAZA Integrative OrthologyDNA repairAT2G02740 AT1G14410
GO:0006952ISOPLAZA Integrative Orthologydefense responseAT2G02740 AT1G14410
GO:0032211ISOPLAZA Integrative Orthologynegative regulation of telomere maintenance via telomeraseAT1G14410
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M002616

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAInterProDNA binding
GO:0003697ISOPLAZA Integrative Orthologysingle-stranded DNA bindingAT1G14410
GO:0042162ISOPLAZA Integrative Orthologytelomeric DNA bindingAT1G14410

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009536RCAGene OntologyplastidGR_REF:7047
GO:0009570ISOPLAZA Integrative Orthologychloroplast stromaAT2G02740
GO:0009508ISOPLAZA Integrative Orthologyplastid chromosomeAT2G02740 AT1G14410
GO:0009295ISOPLAZA Integrative OrthologynucleoidAT2G02740 AT1G14410
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT2G02740 AT1G14410
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G02740 AT1G14410

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009044ssDNA-binding transcriptional regulator
IPR013742Plant transcription factor

Mapman id Description
27.3.67RNA.regulation of transcription.putative transcription regulator
27.3.82RNA.regulation of transcription.plant TF (pbf2)
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBPBF-2-like
PlantTFDBWhirly