Gene: OS03G02970 (Oryza sativa ssp. japonica)

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Gene Identifier
OS03G02970
Transcript Identifier
OS03G02970.1
Gene Type
Coding gene
Location
3 : 1196006-1204839 : negative

Family

Gene family
HOM03M000334
(174 genes in 15 species)
specific family
Subfamily
ORTHO03M002980
(8 genes in 8 species)
specific family

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Descriptions

Description
Dicer, putative, expressed
Description
Endoribonuclease Dicer homolog 1
Description (AnnoMine)
Endoribonuclease Dicer homolog

Identifiers

Identifier Name
transcript_idLOC_OS03G02970.1
uniprotQ8LMR2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007275IMPUniProtmulticellular organismal development1 2 3 4 5 6 7
GO:0090305IEAUniProtnucleic acid phosphodiester bond hydrolysis1 2 3 4 5 6 7
GO:0035196IMPUniProtproduction of miRNAs involved in gene silencing by miRNA1 2 3 4 5 6 7
GO:0006396IEAInterProRNA processing
GO:0010098ISOPLAZA Integrative Orthologysuspensor developmentAT1G01040
GO:0000910ISOPLAZA Integrative OrthologycytokinesisAT1G01040
GO:0035279ISOPLAZA Integrative OrthologymRNA cleavage involved in gene silencing by miRNAAT1G01040
GO:0031053ISOPLAZA Integrative Orthologyprimary miRNA processingAT1G01040
GO:0010267ISOPLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interferenceAT1G01040
GO:0009616ISOPLAZA Integrative Orthologyvirus induced gene silencingAT1G01040
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT1G01040
GO:0010599ISOPLAZA Integrative Orthologyproduction of lsiRNA involved in RNA interferenceAT1G01040
GO:2000034ISOPLAZA Integrative Orthologyregulation of seed maturationAT1G01040
GO:0009880ISOPLAZA Integrative Orthologyembryonic pattern specificationAT1G01040
GO:0009908ISOPLAZA Integrative Orthologyflower developmentAT1G01040
GO:0010228ISOPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT1G01040

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005524IEAUniProtATP binding1 2 3 4 5 6 7
GO:0004386IEAUniProthelicase activity1 2 3 4 5 6 7
GO:0046872IEAUniProtmetal ion binding1 2 3 4 5 6 7
GO:0004525IEAUniProtribonuclease III activity1 2 3 4 5 6 7
GO:0003723IEAUniProtRNA binding1 2 3 4 5 6 7
GO:0005515IEAInterProprotein binding
GO:0016891IEAInterProendoribonuclease activity, producing 5'-phosphomonoesters
GO:0003676IEAInterPronucleic acid binding
GO:0003725ISOPLAZA Integrative Orthologydouble-stranded RNA bindingAT1G01040
GO:0016893IEAPLAZA Homologyendonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoestersHOM03M000334
GO:0004521IEAPLAZA Homologyendoribonuclease activityHOM03M000334

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAUniProtnucleus1 2 3 4 5 6 7
GO:0010445ISOPLAZA Integrative Orthologynuclear dicing bodyAT1G01040

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR000999Ribonuclease III domain
IPR003100Argonaute/Dicer protein, PAZ domain
IPR014720Double-stranded RNA-binding domain
IPR001650Helicase, C-terminal
IPR005034Dicer dimerisation domain

Mapman id Description
27.1.20RNA.processing.degradation dicer
No SignalP domains detected for this gene.