PLAZA 3.0 Monocots gene overview : OS01G19450

Gene: OS01G19450 (Oryza sativa ssp. japonica)

Overview

Gene Identifier: OS01G19450
Transcript Identifier: OS01G19450.1
Gene Type: Coding gene
Location: 1 : 10999806-11004227 : negative

Family

Gene family: HOM03M003544
(25 genes in 14 species)
specific family

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Descriptions

Description: ATP-citrate synthase subunit 1, putative, expressed

Description: ATP-citrate synthase beta chain protein 1

Description (AnnoMine): ATP-citrate synthase beta chain protein 1

Identifiers

Identifier	Name
transcript_id	LOC_OS01G19450.1
uniprot	Q93VT8

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0044262	IEA	UniProt	cellular carbohydrate metabolic process	1 2 3 4 5
GO:0006629	IEA	UniProt	lipid metabolic process	1 2 3 4 5
GO:0008152	IEA	InterPro	metabolic process
GO:0006085	ISO	PLAZA Integrative Orthology	acetyl-CoA biosynthetic process	AT5G49460 AT3G06650

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005524	IEA	UniProt	ATP binding	1 2 3 4 5
GO:0003878	IEA	UniProt	ATP citrate synthase activity	1 2 3 4 5
GO:0016829	IEA	UniProt	lyase activity	1 2 3 4 5
GO:0046872	IEA	UniProt	metal ion binding	1 2 3 4 5
GO:0004775	IEA	UniProt	succinate-CoA ligase (ADP-forming) activity	1 2 3 4 5
GO:0046912	IEA	InterPro	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0003824	IEA	InterPro	catalytic activity
GO:0004774	IEA	PLAZA Homology	succinate-CoA ligase activity	HOM03M003544

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005829	IEA	UniProt	cytosol	1 2 3 4 5
GO:0005886	ISO	PLAZA Integrative Orthology	plasma membrane	AT5G49460
GO:0009346	ISO	PLAZA Integrative Orthology	citrate lyase complex	AT5G49460
GO:0016020	ISO	PLAZA Integrative Orthology	membrane	AT3G06650

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR017866	Succinyl-CoA synthetase, beta subunit, conserved site
IPR005810	Succinyl-CoA ligase, alpha subunit
IPR016102	Succinyl-CoA synthetase-like
IPR016141	Citrate synthase-like, core
IPR017440	ATP-citrate lyase/succinyl-CoA ligase, active site
IPR016143	Citrate synthase-like, small alpha subdomain
IPR005811	ATP-citrate lyase/succinyl-CoA ligase
IPR016142	Citrate synthase-like, large alpha subdomain
IPR002020	Citrate synthase-like
IPR016040	NAD(P)-binding domain

Mapman id	Description
8.2.11	TCA / org transformation.other organic acid transformatons.atp-citrate lyase

No SignalP domains detected for this gene.