Gene: MA04G21890 (Musa acuminata)

Overview top

Gene Identifier
MA04G21890
Transcript Identifier
MA04G21890.1
Gene Type
Coding gene
Location
chr4 : 21778848-21809078 : positive

Family

Gene family
HOM03M000104
(463 genes in 16 species)
specific family

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Descriptions

Description
CC_gene:Chd3,CC_gene:chd-3,CC_gene:Mi-2,CC_gene:Chd4,CC_gene:CHD4,CC_gene:CHD5,CC_gene:CHD3,CC_gene:PKL,CC_functional_completeness:complete,PRODUCT:CHD3-type chromatin-remodeling factor PICKLE,GO:0008270,GO:0006333,GO:0005634,GO:0005524,GO:0005515,GO:0004386,GO:0003682,GO:0003677,GO:0003676,GO:0000785,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number
Description (AnnoMine)
CHD3-type chromatin-remodeling factor PICKLE

Identifiers

Identifier Name
GeneNameGSMUA_Achr4G21270_001
pidGSMUA_Achr4P21270_001
idGSMUA_Achr4T21270_001
tidGSMUA_Achr4T21270_001

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0048364ISOPLAZA Integrative Orthologyroot developmentAT2G25170
GO:0009739ISOPLAZA Integrative Orthologyresponse to gibberellin stimulusAT2G25170
GO:0008283ISOPLAZA Integrative Orthologycell proliferationAT2G25170
GO:0009788ISOPLAZA Integrative Orthologynegative regulation of abscisic acid-activated signaling pathwayAT2G25170
GO:2000023ISOPLAZA Integrative Orthologyregulation of lateral root developmentAT2G25170
GO:0009733ISOPLAZA Integrative Orthologyresponse to auxinAT2G25170
GO:0009736ISOPLAZA Integrative Orthologycytokinin-activated signaling pathwayAT2G25170
GO:0045892ISOPLAZA Integrative Orthologynegative regulation of transcription, DNA-dependentAT2G25170

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0004386IEAInterProhelicase activity
GO:0008270IEAInterProzinc ion binding
GO:0003676IEAInterPronucleic acid binding
GO:0003677IEAInterProDNA binding
GO:0005524IEAInterProATP binding
GO:0032555IEAPLAZA Homologypurine ribonucleotide bindingHOM03M000104
GO:0016817IEAPLAZA Homologyhydrolase activity, acting on acid anhydridesHOM03M000104
GO:0032553IEAPLAZA Homologyribonucleotide bindingHOM03M000104
GO:0035639IEAPLAZA Homologypurine ribonucleoside triphosphate bindingHOM03M000104
GO:0097367IEAPLAZA Homologycarbohydrate derivative bindingHOM03M000104
GO:0016818IEAPLAZA Homologyhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesHOM03M000104
GO:0032559IEAPLAZA Homologyadenyl ribonucleotide bindingHOM03M000104
GO:0016462IEAPLAZA Homologypyrophosphatase activityHOM03M000104
GO:0030554IEAPLAZA Homologyadenyl nucleotide bindingHOM03M000104
GO:0001882IEAPLAZA Homologynucleoside bindingHOM03M000104
GO:0017076IEAPLAZA Homologypurine nucleotide bindingHOM03M000104
GO:0017111IEAPLAZA Homologynucleoside-triphosphatase activityHOM03M000104
GO:0032549IEAPLAZA Homologyribonucleoside bindingHOM03M000104
GO:0001883IEAPLAZA Homologypurine nucleoside bindingHOM03M000104
GO:0032550IEAPLAZA Homologypurine ribonucleoside bindingHOM03M000104

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G25170

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000953Chromo domain/shadow
IPR001965Zinc finger, PHD-type
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR001650Helicase, C-terminal
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR009462Domain of unknown function DUF1086
IPR019787Zinc finger, PHD-finger
IPR023780Chromo domain
IPR019786Zinc finger, PHD-type, conserved site
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR016197Chromo domain-like
IPR009463Domain of unknown function DUF1087
IPR000330SNF2-related

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.