Gene: HV1557904G00010 (Hordeum vulgare)

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Gene Identifier
HV1557904G00010
Transcript Identifier
HV1557904G00010.1
Gene Type
Coding gene
Location
contig_1557904 : 2352-7269 : positive

Family

Gene family
HOM03M001131
(64 genes in 14 species)
specific family

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Descriptions

Description (AnnoMine)
Phytochrome A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameMLOC_9834
pidMLOC_9834.1
idMLOC_9834.1
tidMLOC_9834.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0018298IEAInterProprotein-chromophore linkage
GO:0009584IEAInterProdetection of visible light
GO:0007165IEAInterProsignal transduction
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0010017ISOPLAZA Integrative Orthologyred or far-red light signaling pathwayAT4G16250
GO:0010202ISOPLAZA Integrative Orthologyresponse to low fluence red light stimulusAT2G18790
GO:0010218ISOPLAZA Integrative Orthologyresponse to far red lightAT2G18790
GO:0009640ISOPLAZA Integrative OrthologyphotomorphogenesisAT2G18790
GO:0006325ISOPLAZA Integrative Orthologychromatin organizationAT2G18790
GO:0015979ISOPLAZA Integrative OrthologyphotosynthesisAT2G18790
GO:0010374ISOPLAZA Integrative Orthologystomatal complex developmentAT2G18790
GO:0010148ISOPLAZA Integrative OrthologytranspirationAT2G18790
GO:0031347ISOPLAZA Integrative Orthologyregulation of defense responseAT2G18790
GO:0009867ISOPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT2G18790
GO:0010617ISOPLAZA Integrative Orthologycircadian regulation of calcium ion oscillationAT2G18790
GO:0010161ISOPLAZA Integrative Orthologyred light signaling pathwayAT2G18790
GO:0010029ISOPLAZA Integrative Orthologyregulation of seed germinationAT2G18790
GO:0009687ISOPLAZA Integrative Orthologyabscisic acid metabolic processAT2G18790
GO:0009630ISOPLAZA Integrative OrthologygravitropismAT2G18790
GO:0009638ISOPLAZA Integrative OrthologyphototropismAT2G18790
GO:0009649ISOPLAZA Integrative Orthologyentrainment of circadian clockAT2G18790
GO:0009409ISOPLAZA Integrative Orthologyresponse to coldAT2G18790
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M001131

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0004871IEAInterProsignal transducer activity
GO:0005524IEAInterProATP binding
GO:0000155IEAInterProphosphorelay sensor kinase activity
GO:0009883ISOPLAZA Integrative Orthologyred or far-red light photoreceptor activityAT4G16250 AT2G18790
GO:0042802ISOPLAZA Integrative Orthologyidentical protein bindingAT4G16250 AT2G18790
GO:0031517ISOPLAZA Integrative Orthologyred light photoreceptor activityAT2G18790
GO:0031516ISOPLAZA Integrative Orthologyfar-red light photoreceptor activityAT2G18790
GO:0009881IEAPLAZA Homologyphotoreceptor activityHOM03M001131

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016020IEAInterPromembrane
GO:0005634ISOPLAZA Integrative OrthologynucleusAT4G16250 AT2G18790
GO:0016604ISOPLAZA Integrative Orthologynuclear bodyAT2G18790
GO:0005829ISOPLAZA Integrative OrthologycytosolAT2G18790

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001294Phytochrome
IPR003661Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain
IPR013516Phytochrome chromophore binding site
IPR000014PAS domain
IPR013767PAS fold
IPR003594Histidine kinase-like ATPase, ATP-binding domain
IPR013654PAS fold-2
IPR016132Phytochrome chromophore attachment domain
IPR003018GAF domain
IPR009082Signal transduction histidine kinase, homodimeric domain
IPR005467Signal transduction histidine kinase, core
IPR013515Phytochrome, central region

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.