Gene: CR02G13390 (Chlamydomonas reinhardtii)

Overview top

Gene Identifier
CR02G13390
Transcript Identifier
CR02G13390.1
Gene Type
Coding gene
Location
chromosome_2 : 7939586-7952729 : positive

Family

Gene family
HOM03M000334
(174 genes in 15 species)
specific family

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Descriptions

Description (AnnoMine)
Dicer-like protein
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidCre02.g141000.t1.3
idPAC:27575191

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006396IEAInterProRNA processing
GO:0010098ISOPLAZA Integrative Orthologysuspensor developmentAT1G01040
GO:0000910ISOPLAZA Integrative OrthologycytokinesisAT1G01040
GO:0035279ISOPLAZA Integrative OrthologymRNA cleavage involved in gene silencing by miRNAAT1G01040
GO:0031053ISOPLAZA Integrative Orthologyprimary miRNA processingAT1G01040
GO:0010267ISOPLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interferenceAT1G01040 AT3G03300 AT3G43920 AT5G20320
GO:0035196ISOPLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNAAT1G01040 AT3G03300 AT3G43920 AT5G20320 OS03G02970
GO:0009616ISOPLAZA Integrative Orthologyvirus induced gene silencingAT1G01040 AT5G20320
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT1G01040 AT3G43920 AT5G20320
GO:0010599ISOPLAZA Integrative Orthologyproduction of lsiRNA involved in RNA interferenceAT1G01040 AT5G20320
GO:2000034ISOPLAZA Integrative Orthologyregulation of seed maturationAT1G01040
GO:0009880ISOPLAZA Integrative Orthologyembryonic pattern specificationAT1G01040
GO:0009908ISOPLAZA Integrative Orthologyflower developmentAT1G01040
GO:0010228ISOPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT1G01040
GO:0010216ISOPLAZA Integrative Orthologymaintenance of DNA methylationAT3G03300 AT3G43920 AT5G20320
GO:0051607ISOPLAZA Integrative Orthologydefense response to virusAT3G03300 AT5G20320
GO:0010050ISOPLAZA Integrative Orthologyvegetative phase changeAT5G20320
GO:0006353ISOPLAZA Integrative OrthologyDNA-dependent transcription, terminationAT5G20320
GO:0007275ISOPLAZA Integrative Orthologymulticellular organismal developmentOS03G02970

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008026IEAInterProATP-dependent helicase activity
GO:0004525IEAInterProribonuclease III activity
GO:0016891IEAInterProendoribonuclease activity, producing 5'-phosphomonoesters
GO:0003723IEAInterProRNA binding
GO:0004386IEAInterProhelicase activity
GO:0003676IEAInterPronucleic acid binding
GO:0005524IEAInterProATP binding
GO:0003725ISOPLAZA Integrative Orthologydouble-stranded RNA bindingAT1G01040 AT3G43920
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT1G01040 AT3G03300 AT3G43920 AT5G20320
GO:0016893IEAPLAZA Homologyendonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoestersHOM03M000334
GO:0004521IEAPLAZA Homologyendoribonuclease activityHOM03M000334

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT1G01040 AT3G43920 AT5G20320
GO:0010445ISOPLAZA Integrative Orthologynuclear dicing bodyAT1G01040
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT3G43920

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR001650Helicase, C-terminal
IPR000999Ribonuclease III domain
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR011545DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR005034Dicer dimerisation domain

Mapman id Description
27.1.20RNA.processing.degradation dicer
32micro RNA, natural antisense etc
No SignalP domains detected for this gene.