PLAZA 3.0 Monocots gene overview : CPCG00480

Gene: CPCG00480 (Carica papaya)

Overview

Gene Identifier: CPCG00480
Transcript Identifier: CPCG00480.1
Gene Type: Coding gene
Location: chloroplast : 56035-56436 : negative

Family

Gene family: HOM03M003562
(25 genes in 15 species)
specific family

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Descriptions

Description (AnnoMine): epsilon chain, chloroplastic

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	ABY86788.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0015986	IEA	Genome Project	ATP synthesis coupled proton transport
GO:0045333	ISO	PLAZA Integrative Orthology	cellular respiration	ATCG00470
GO:0042776	ISO	PLAZA Integrative Orthology	mitochondrial ATP synthesis coupled proton transport	ATCG00470
GO:0015985	IEA	PLAZA Homology	energy coupled proton transport, down electrochemical gradient	HOM03M003562

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0046961	IEA	Genome Project	proton-transporting ATPase activity, rotational mechanism
GO:0046933	IEA	Genome Project	proton-transporting ATP synthase activity, rotational mechanism

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0045261	IEA	Genome Project	proton-transporting ATP synthase complex, catalytic core F(1)
GO:0009536	ISO	PLAZA Integrative Orthology	plastid	OSCG00520 OS10G21264 OS06G39756 OS01G58000
GO:0009941	ISO	PLAZA Integrative Orthology	chloroplast envelope	ATCG00470
GO:0009534	ISO	PLAZA Integrative Orthology	chloroplast thylakoid	ATCG00470
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	ATCG00470
GO:0009579	ISO	PLAZA Integrative Orthology	thylakoid	ATCG00470
GO:0009535	ISO	PLAZA Integrative Orthology	chloroplast thylakoid membrane	ATCG00470
GO:0045259	ISO	PLAZA Integrative Orthology	proton-transporting ATP synthase complex	ATCG00470

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR020546	ATPase, F1 complex, delta/epsilon subunit, N-terminal
IPR001469	ATPase, F1 complex, delta/epsilon subunit
IPR020547	ATPase, F1 complex, delta/epsilon subunit, C-terminal domain

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.