PLAZA 3.0 Monocots gene overview : CP29644G00010

Gene: CP29644G00010 (Carica papaya)

Overview

Gene Identifier: CP29644G00010
Transcript Identifier: CP29644G00010.1
Gene Type: Coding gene
Location: contig_29644 : 1233-3266 : positive

Family

Gene family: HOM03M000227
(223 genes in 15 species)
specific family

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Descriptions

Description (AnnoMine): lysine-27, H4 lysine-20 and cytosine specific SUVH2

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.contig_29644.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0016568	IEA	Genome Project	chromatin modification
GO:0016571	IEA	InterPro	histone methylation
GO:0034968	IEA	InterPro	histone lysine methylation
GO:0040029	ISO	PLAZA Integrative Orthology	regulation of gene expression, epigenetic	AT2G33290
GO:0009294	ISO	PLAZA Integrative Orthology	DNA mediated transformation	AT4G13460
GO:0006325	IEA	PLAZA Homology	chromatin organization	HOM03M000227
GO:0032259	IEA	PLAZA Homology	methylation	HOM03M000227
GO:0051276	IEA	PLAZA Homology	chromosome organization	HOM03M000227
GO:0006479	IEA	PLAZA Homology	protein methylation	HOM03M000227
GO:0016570	IEA	PLAZA Homology	histone modification	HOM03M000227
GO:0043414	IEA	PLAZA Homology	macromolecule methylation	HOM03M000227
GO:0008213	IEA	PLAZA Homology	protein alkylation	HOM03M000227
GO:0016569	IEA	PLAZA Homology	covalent chromatin modification	HOM03M000227

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0008270	IEA	Genome Project	zinc ion binding
GO:0018024	IEA	Genome Project	histone-lysine N-methyltransferase activity
GO:0005515	IEA	InterPro	protein binding
GO:0042393	IEA	InterPro	histone binding
GO:0008168	IEA	PLAZA Homology	methyltransferase activity	HOM03M000227
GO:0008757	IEA	PLAZA Homology	S-adenosylmethionine-dependent methyltransferase activity	HOM03M000227
GO:0008170	IEA	PLAZA Homology	N-methyltransferase activity	HOM03M000227
GO:0008276	IEA	PLAZA Homology	protein methyltransferase activity	HOM03M000227
GO:0042054	IEA	PLAZA Homology	histone methyltransferase activity	HOM03M000227
GO:0016278	IEA	PLAZA Homology	lysine N-methyltransferase activity	HOM03M000227
GO:0016279	IEA	PLAZA Homology	protein-lysine N-methyltransferase activity	HOM03M000227

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	Genome Project	nucleus
GO:0005720	ISO	PLAZA Integrative Orthology	nuclear heterochromatin	AT2G33290

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR007728	Pre-SET domain
IPR001214	SET domain
IPR003105	SRA-YDG
IPR015947	PUA-like domain
IPR025794	Histone H3-K9 methyltransferase, plant
IPR003606	Pre-SET zinc-binding sub-group

Mapman id	Description
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family

No SignalP domains detected for this gene.