PLAZA 3.0 Monocots gene overview : CP00229G00040

Gene: CP00229G00040 (Carica papaya)

Overview

Gene Identifier: CP00229G00040
Transcript Identifier: CP00229G00040.1
Gene Type: Coding gene
Location: supercontig_229 : 25253-34938 : positive

Family

Gene family: HOM03M001906
(42 genes in 16 species)
specific family
Subfamily: ORTHO03M026211
(2 genes in 2 species)
specific family

Loading...please wait

Descriptions

Description (AnnoMine): factor IF-2

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_229.4

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006413	IEA	Genome Project	translational initiation

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003743	IEA	Genome Project	translation initiation factor activity
GO:0005525	IEA	Genome Project	GTP binding
GO:0003924	IEA	Genome Project	GTPase activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005622	IEA	Genome Project	intracellular
GO:0009570	ISO	PLAZA Integrative Orthology	chloroplast stroma	AT1G17220
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT1G17220
GO:0009941	ISO	PLAZA Integrative Orthology	chloroplast envelope	AT1G17220

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000795	Elongation factor, GTP-binding domain
IPR004161	Translation elongation factor EFTu/EF1A, domain 2
IPR009000	Translation protein, beta-barrel domain
IPR000178	Translation initiation factor aIF-2, bacterial-like
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR023115	Translation initiation factor IF- 2, domain 3
IPR015760	Translation initiation factor IF- 2
IPR005225	Small GTP-binding protein domain
IPR006847	Translation initiation factor IF-2, N-terminal

No MapMan annotations defined for this gene.

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network