PLAZA 3.0 Monocots gene overview : CP00163G00210

Gene: CP00163G00210 (Carica papaya)

Overview

Gene Identifier: CP00163G00210
Transcript Identifier: CP00163G00210.1
Gene Type: Coding gene
Location: supercontig_163 : 458039-458458 : negative

Family

Gene family: HOM03M000302
(183 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): Histone H2B

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_163.21

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006334	IEA	Genome Project	nucleosome assembly
GO:0071824	IEA	PLAZA Homology	protein-DNA complex subunit organization	HOM03M000302
GO:0071822	IEA	PLAZA Homology	protein complex subunit organization	HOM03M000302
GO:0006325	IEA	PLAZA Homology	chromatin organization	HOM03M000302
GO:0006323	IEA	PLAZA Homology	DNA packaging	HOM03M000302
GO:0070271	IEA	PLAZA Homology	protein complex biogenesis	HOM03M000302
GO:0043933	IEA	PLAZA Homology	macromolecular complex subunit organization	HOM03M000302
GO:0031497	IEA	PLAZA Homology	chromatin assembly	HOM03M000302
GO:0006996	IEA	PLAZA Homology	organelle organization	HOM03M000302
GO:0071103	IEA	PLAZA Homology	DNA conformation change	HOM03M000302
GO:0065003	IEA	PLAZA Homology	macromolecular complex assembly	HOM03M000302
GO:0065004	IEA	PLAZA Homology	protein-DNA complex assembly	HOM03M000302
GO:0006333	IEA	PLAZA Homology	chromatin assembly or disassembly	HOM03M000302
GO:0051276	IEA	PLAZA Homology	chromosome organization	HOM03M000302
GO:0044085	IEA	PLAZA Homology	cellular component biogenesis	HOM03M000302
GO:0022607	IEA	PLAZA Homology	cellular component assembly	HOM03M000302
GO:0034728	IEA	PLAZA Homology	nucleosome organization	HOM03M000302
GO:0034622	IEA	PLAZA Homology	cellular macromolecular complex assembly	HOM03M000302
GO:0006461	IEA	PLAZA Homology	protein complex assembly	HOM03M000302

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	Genome Project	DNA binding
GO:0046982	IEA	InterPro	protein heterodimerization activity
GO:0046983	IEA	PLAZA Homology	protein dimerization activity	HOM03M000302

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	Genome Project	nucleus
GO:0000786	IEA	Genome Project	nucleosome
GO:0032993	IEA	PLAZA Homology	protein-DNA complex	HOM03M000302
GO:1990104	IEA	PLAZA Homology	DNA bending complex	HOM03M000302
GO:0000785	IEA	PLAZA Homology	chromatin	HOM03M000302
GO:0044815	IEA	PLAZA Homology	DNA packaging complex	HOM03M000302
GO:0005694	IEA	PLAZA Homology	chromosome	HOM03M000302
GO:0044427	IEA	PLAZA Homology	chromosomal part	HOM03M000302

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000558	Histone H2B
IPR007125	Histone core
IPR009072	Histone-fold

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.