Gene: CP00157G00500 (Carica papaya)

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Gene Identifier
CP00157G00500
Transcript Identifier
CP00157G00500.1
Gene Type
Coding gene
Location
supercontig_157 : 338831-339829 : negative

Family

Gene family
HOM03M000068
(644 genes in 16 species)
specific family
Subfamily
ORTHO03M025326
(2 genes in 2 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidevm.TU.supercontig_157.50

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006970ISOPLAZA Integrative Orthologyresponse to osmotic stressAT3G23830 AT4G13850
GO:0009409ISOPLAZA Integrative Orthologyresponse to coldAT3G23830 AT4G13850
GO:0009414ISOPLAZA Integrative Orthologyresponse to water deprivationAT3G23830 AT4G13850
GO:0009651ISOPLAZA Integrative Orthologyresponse to salt stressAT3G23830 AT4G13850
GO:0009631ISOPLAZA Integrative Orthologycold acclimationAT4G13850
GO:0009845ISOPLAZA Integrative Orthologyseed germinationAT4G13850
GO:0031564ISOPLAZA Integrative Orthologytranscription antiterminationAT4G13850

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166IEAGenome Projectnucleotide binding
GO:0003676IEAGenome Projectnucleic acid binding
GO:0003690ISOPLAZA Integrative Orthologydouble-stranded DNA bindingAT3G23830 AT4G13850
GO:0003697ISOPLAZA Integrative Orthologysingle-stranded DNA bindingAT3G23830 AT4G13850
GO:0003723ISOPLAZA Integrative OrthologyRNA bindingAT3G23830 AT4G13850
GO:0005524ISOPLAZA Integrative OrthologyATP bindingAT4G13850
GO:0001072ISOPLAZA Integrative OrthologyRNA binding transcription antitermination factor activityAT4G13850
GO:0005507ISOPLAZA Integrative Orthologycopper ion bindingAT4G13850
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03M000068
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03M000068
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03M000068
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03M000068

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739ISOPLAZA Integrative OrthologymitochondrionAT3G23830 AT4G13850

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000504RNA recognition motif domain
IPR012677Nucleotide-binding, alpha-beta plait

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.