PLAZA 3.0 Monocots gene overview : CP00155G00180

Gene: CP00155G00180 (Carica papaya)

Overview

Gene Identifier: CP00155G00180
Transcript Identifier: CP00155G00180.1
Gene Type: Coding gene
Location: supercontig_155 : 401089-404308 : positive

Family

Gene family: HOM03M014145
(2 genes in 1 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description (AnnoMine): Pentatricopeptide repeat-containing protein At1g63080, mitochondrial

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_155.18

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002885	Pentatricopeptide repeat
IPR023214	HAD-like domain

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.