PLAZA 3.0 Monocots gene overview : CP00147G00170

Gene: CP00147G00170 (Carica papaya)

Overview

Gene Identifier: CP00147G00170
Transcript Identifier: CP00147G00170.1
Gene Type: Coding gene
Location: supercontig_147 : 410580-417111 : positive

Family

Gene family: HOM03M000037
(943 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): box ATP-dependent RNA helicase 58, chloroplastic

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_147.17

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Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005524	IEA	Genome Project	ATP binding
GO:0004386	IEA	Genome Project	helicase activity
GO:0008026	IEA	Genome Project	ATP-dependent helicase activity
GO:0003676	IEA	Genome Project	nucleic acid binding
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03M000037
GO:0016817	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides	HOM03M000037
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03M000037
GO:0042623	IEA	PLAZA Homology	ATPase activity, coupled	HOM03M000037
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03M000037
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03M000037
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03M000037
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03M000037
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000037
GO:0016818	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	HOM03M000037
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03M000037
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000037
GO:0016462	IEA	PLAZA Homology	pyrophosphatase activity	HOM03M000037
GO:0000166	IEA	PLAZA Homology	nucleotide binding	HOM03M000037
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03M000037
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03M000037
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000037
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03M000037
GO:0016887	IEA	PLAZA Homology	ATPase activity	HOM03M000037
GO:0017111	IEA	PLAZA Homology	nucleoside-triphosphatase activity	HOM03M000037
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03M000037
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03M000037
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03M000037
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000037
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000037
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03M000037
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03M000037
GO:0070035	IEA	PLAZA Homology	purine NTP-dependent helicase activity	HOM03M000037

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001650	Helicase, C-terminal
IPR014001	Helicase, superfamily 1/2, ATP-binding domain
IPR011545	DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.