PLAZA 3.0 Monocots gene overview : CP00125G00090

Gene: CP00125G00090 (Carica papaya)

Overview

Gene Identifier: CP00125G00090
Transcript Identifier: CP00125G00090.1
Gene Type: Coding gene
Location: supercontig_125 : 241951-245397 : positive

Family

Gene family: HOM03M000089
(508 genes in 14 species)
specific family
Duplication type: Tandem duplicate

Loading...please wait

Descriptions

Description (AnnoMine): Polygalacturonase QRT2

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_125.9

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0005975	IEA	Genome Project	carbohydrate metabolic process
GO:0045490	ISO	PLAZA Integrative Orthology	pectin catabolic process	AT3G07970
GO:0048235	ISO	PLAZA Integrative Orthology	pollen sperm cell differentiation	AT3G07970
GO:0010047	ISO	PLAZA Integrative Orthology	fruit dehiscence	AT3G07970
GO:0009901	ISO	PLAZA Integrative Orthology	anther dehiscence	AT3G07970
GO:0009830	ISO	PLAZA Integrative Orthology	cell wall modification involved in abscission	AT3G07970
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03M000089

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004650	IEA	Genome Project	polygalacturonase activity
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03M000089
GO:0016798	IEA	PLAZA Homology	hydrolase activity, acting on glycosyl bonds	HOM03M000089
GO:0004553	IEA	PLAZA Homology	hydrolase activity, hydrolyzing O-glycosyl compounds	HOM03M000089

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR006626	Parallel beta-helix repeat
IPR000743	Glycoside hydrolase, family 28
IPR011050	Pectin lyase fold/virulence factor
IPR012334	Pectin lyase fold

No MapMan annotations defined for this gene.

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network