Gene: CP00116G00540 (Carica papaya)

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Gene Identifier
CP00116G00540
Transcript Identifier
CP00116G00540.1
Gene Type
Coding gene
Location
supercontig_116 : 512894-514201 : positive

Family

Gene family
HOM03M001476
(52 genes in 13 species)
specific family
Subfamily
ORTHO03M006201
(6 genes in 5 species)
specific family

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Descriptions

Description (AnnoMine)
HMG-Y-related protein A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidevm.TU.supercontig_116.54

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:0006334IEAGenome Projectnucleosome assembly
GO:0034728IEAPLAZA Homologynucleosome organizationHOM03M001476

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAGenome Projectnucleus
GO:0000785IEAGenome Projectchromatin
GO:0000786IEAGenome Projectnucleosome
GO:1990104IEAPLAZA HomologyDNA bending complexHOM03M001476

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011991Winged helix-turn-helix DNA-binding domain
IPR020478AT hook-like
IPR005818Linker histone H1/H5, domain H15
IPR017956AT hook, DNA-binding motif
IPR000116High mobility group, HMG-I/HMG-Y

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.