PLAZA 3.0 Monocots gene overview : CP00116G00540

Gene: CP00116G00540 (Carica papaya)

Overview

Gene Identifier: CP00116G00540
Transcript Identifier: CP00116G00540.1
Gene Type: Coding gene
Location: supercontig_116 : 512894-514201 : positive

Family

Gene family: HOM03M001476
(52 genes in 13 species)
specific family
Subfamily: ORTHO03M006201
(6 genes in 5 species)
specific family

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Descriptions

Description (AnnoMine): HMG-Y-related protein A

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_116.54

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA	Genome Project	regulation of transcription, DNA-dependent
GO:0006334	IEA	Genome Project	nucleosome assembly
GO:0034728	IEA	PLAZA Homology	nucleosome organization	HOM03M001476

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	Genome Project	DNA binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	Genome Project	nucleus
GO:0000785	IEA	Genome Project	chromatin
GO:0000786	IEA	Genome Project	nucleosome
GO:1990104	IEA	PLAZA Homology	DNA bending complex	HOM03M001476

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR020478	AT hook-like
IPR005818	Linker histone H1/H5, domain H15
IPR017956	AT hook, DNA-binding motif
IPR000116	High mobility group, HMG-I/HMG-Y

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.