PLAZA 3.0 Monocots gene overview : CP00094G00540

Gene: CP00094G00540 (Carica papaya)

Overview

Gene Identifier: CP00094G00540
Transcript Identifier: CP00094G00540.1
Gene Type: Coding gene
Location: supercontig_94 : 803304-804938 : negative

Family

Gene family: HOM03M000068
(644 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): rich RNA-binding protein 3, mitochondrial

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_94.54

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009409	ISO	PLAZA Integrative Orthology	response to cold	AT5G61030

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000166	IEA	Genome Project	nucleotide binding
GO:0003676	IEA	Genome Project	nucleic acid binding
GO:0003723	ISO	PLAZA Integrative Orthology	RNA binding	AT1G74230
GO:0005524	ISO	PLAZA Integrative Orthology	ATP binding	AT1G74230 AT5G61030
GO:0005507	ISO	PLAZA Integrative Orthology	copper ion binding	AT1G74230 AT5G61030
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000068
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000068
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03M000068
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000068

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005739	ISO	PLAZA Integrative Orthology	mitochondrion	AT1G74230 AT5G61030

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding, alpha-beta plait

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.