Gene: CP00088G00040 (Carica papaya)

Overview top

Gene Identifier
CP00088G00040
Transcript Identifier
CP00088G00040.1
Gene Type
Coding gene
Location
supercontig_88 : 67892-87691 : positive

Family

Gene family
HOM03M003499
(25 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine)
HIV Tat-specific factor 1 homolog
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidevm.TU.supercontig_88.4

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009910ISOPLAZA Integrative Orthologynegative regulation of flower developmentAT5G16260
GO:0000184ISOPLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, nonsense-mediated decayAT5G16260

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166IEAGenome Projectnucleotide binding
GO:0003676IEAGenome Projectnucleic acid binding
GO:0003729ISOPLAZA Integrative OrthologymRNA bindingAT5G16260
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03M003499
GO:0005515IEAPLAZA Homologyprotein bindingHOM03M003499

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829ISOPLAZA Integrative OrthologycytosolAT5G16260
GO:0005634ISOPLAZA Integrative OrthologynucleusAT5G16260

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012677Nucleotide-binding, alpha-beta plait
IPR000504RNA recognition motif domain

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.