Gene: CP00073G00280 (Carica papaya)

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Gene Identifier
CP00073G00280
Transcript Identifier
CP00073G00280.1
Gene Type
Coding gene
Location
supercontig_73 : 421117-425425 : positive

Family

Gene family
HOM03M000679
(102 genes in 16 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description (AnnoMine)
sigma factor SigA
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidevm.TU.supercontig_73.28

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:0006352IEAGenome ProjectDNA-dependent transcription, initiation
GO:2001141ISOPLAZA Integrative Orthologyregulation of RNA biosynthetic processAT3G53920 AT1G08540
GO:0071482ISOPLAZA Integrative Orthologycellular response to light stimulusAT3G53920 AT1G08540
GO:0010114ISOPLAZA Integrative Orthologyresponse to red lightAT1G08540
GO:0009637ISOPLAZA Integrative Orthologyresponse to blue lightAT1G08540
GO:0006399ISOPLAZA Integrative OrthologytRNA metabolic processAT1G08540
GO:0009658ISOPLAZA Integrative Orthologychloroplast organizationAT1G08540

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding
GO:0016987IEAGenome Projectsigma factor activity
GO:0003700IEAGenome Projectsequence-specific DNA binding transcription factor activity
GO:0003899ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase activityAT3G53920
GO:0001053ISOPLAZA Integrative Orthologyplastid sigma factor activityAT3G53920 AT1G08540
GO:0000990IEAPLAZA Homologycore RNA polymerase binding transcription factor activityHOM03M000679
GO:0000996IEAPLAZA Homologycore DNA-dependent RNA polymerase binding promoter specificity activityHOM03M000679

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009536ISOPLAZA Integrative OrthologyplastidOS11G26160 OS03G16430
GO:0005739ISOPLAZA Integrative OrthologymitochondrionOS03G16430
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT3G53920 AT1G08540

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007627RNA polymerase sigma-70 region 2
IPR013324RNA polymerase sigma factor, region 3/4
IPR013325RNA polymerase sigma factor, region 2
IPR007624RNA polymerase sigma-70 region 3
IPR011991Winged helix-turn-helix DNA-binding domain
IPR014284RNA polymerase sigma-70 like domain

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBOrphans