PLAZA 3.0 Monocots gene overview : CP00050G01390

Gene: CP00050G01390 (Carica papaya)

Overview

Gene Identifier: CP00050G01390
Transcript Identifier: CP00050G01390.1
Gene Type: Coding gene
Location: supercontig_50 : 1291943-1303520 : positive

Family

Gene family: HOM03M001792
(44 genes in 16 species)
specific family
Subfamily: ORTHO03M007815
(5 genes in 5 species)
specific family

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Descriptions

Description (AnnoMine): protein MutS

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_50.139

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006298	IEA	Genome Project	mismatch repair
GO:0006290	ISO	PLAZA Integrative Orthology	pyrimidine dimer repair	AT4G02070

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005524	IEA	Genome Project	ATP binding
GO:0030983	IEA	Genome Project	mismatched DNA binding
GO:0003684	ISO	PLAZA Integrative Orthology	damaged DNA binding	AT4G02070
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT4G02070

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR015536	DNA mismatch repair protein MutS-homologue MSH6
IPR007696	DNA mismatch repair protein MutS, core
IPR007860	DNA mismatch repair protein MutS, connector domain
IPR000432	DNA mismatch repair protein MutS, C-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR007861	DNA mismatch repair protein MutS, clamp
IPR007695	DNA mismatch repair protein MutS-like, N-terminal
IPR016151	DNA mismatch repair protein MutS, N-terminal

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.